Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1210
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   4.1  
At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger) fa...    28   7.1  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    27   9.4  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 80  HEMRSRA*AEETWLRRKSHEELGMSGRAR 166
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 240

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +2

Query: 227 VPDQRPVLVRKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHR--FDAWYGWK--NH 394
           +P ++ V + +  S  + C V   D     I    +C   + K HR   DAW+  K  N 
Sbjct: 56  IPPEKEVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQ 115

Query: 395 CQ 400
           C+
Sbjct: 116 CE 117


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 353 KRHRFDAWYGWKNHCQGSLPDISS 424
           + HR + +Y WK  C+  +P + S
Sbjct: 100 RNHRREQYYAWKEECKNMVPLVGS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,369
Number of Sequences: 28952
Number of extensions: 266299
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)