Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1208
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 33 0.058
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.7
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 27 2.2
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 2.9
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 27 3.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.1
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 6.7
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 26 6.7
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 26 6.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 8.9
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 32.7 bits (71), Expect = 0.058
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 516 VEELTILSQNLHSXXXXXXXXXXXXKDENATLKEKVNYLEKERAKYLN------LGMSSN 677
VEELT+ + HS K E LKEK+ +E ER + ++ L
Sbjct: 246 VEELTVQASQKHSHIAEMESSLQTSKQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQ 305
Query: 678 DLSFNFTSLSISNDISNEVNE 740
++ N T +S S ++ N E
Sbjct: 306 TVNENITRISTSIELKNTALE 326
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNF----TSLSISNDISNEVNERPLI 752
L+ +V YLE K N +SSN SF F +N++ N ER +I
Sbjct: 77 LESRVRYLETLLKKNTNFDLSSNSPSFLFFLREQKFQATNELENMSPERKVI 128
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 134 MQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLKSTK 265
++ HQS++ + + KLT+S L L +L KQK +++ K
Sbjct: 281 LKSHQSSSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKK 324
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 194 TLALEAITLQHSYHLKQKDLKSTKKSNMSELKKPWIQLSG-*EKNQYLIFKVMTM 355
TLA + + LQ Q++L + +SN+ K + G E N Y + KV T+
Sbjct: 236 TLAAQNLDLQTQLDRLQRELDTNIRSNVKSKPKKIVTTGGIPENNDYTVGKVDTL 290
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 238 KTKRFKKYKKEQYVRVKKAMDTIKRLGK 321
K K F++YKK ++ KKA IK+L K
Sbjct: 56 KQKIFERYKKVRFFERKKAERRIKQLEK 83
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 597 ENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISNEVNER 743
+ L+EK+ +LE+ER+ ++ S FN+ + + + NE+ ER
Sbjct: 957 QTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQD--KNELEER 1003
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 92 RAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLKSTKKS 271
RA+AH +++EA++ QSA EL L L+ + K L +K++
Sbjct: 301 RAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSKRKDHYKILGVSKEA 360
Query: 272 NMSELKKPWIQLS 310
E+KK + +L+
Sbjct: 361 TDIEIKKAYRKLA 373
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 594 DENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSL 704
D+N +L+++V YLE E K L + N L+ F L
Sbjct: 106 DDNVSLEKRVEYLETENTK---LVKTLNSLNSEFLQL 139
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLS 707
+K K+ YL+ A++ N S+N+ NF L+
Sbjct: 158 IKGKIYYLQAREARFRNTNESTNERVKNFAYLT 190
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 591 KDENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISN 716
K+ A+LK ++N+LEKE + + +N+ ++ + IS+
Sbjct: 341 KEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISD 382
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +1
Query: 151 CCRTSC*CNEVNDFYFGFRGYYAATQLSLKTKRFKKYKKEQYVRVKKAMDTIKRLGKEPI 330
C R S C VND YF G T+ S +F E +V + +L K+
Sbjct: 98 CFRCSL-CMTVNDVYFCLSGSQIKTKASTDGSQF--ISVEHFVETIHQTRSALQLAKQRT 154
Query: 331 SNLQ 342
N+Q
Sbjct: 155 GNVQ 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,568
Number of Sequences: 5004
Number of extensions: 37883
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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