Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1208
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0609 + 22710442-22713502,22713596-22713948                       29   4.0  
11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158           29   5.3  
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285...    28   7.0  
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073...    28   9.3  
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085...    28   9.3  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    28   9.3  

>06_03_0609 + 22710442-22713502,22713596-22713948
          Length = 1137

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 678 DLSFNFTSLSISNDISNEVNERPLIL 755
           DLS+N+ S SIS+++ N VN   LI+
Sbjct: 615 DLSYNYLSGSISDEVGNLVNLNKLII 640


>11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158
          Length = 425

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 206 LKPK*KSLTSLHQQEVRQHFDDIALLHHICDSSSELQHDDVA 81
           L+ K K   +  QQ+   H  D+A LH    +++  +HD+V+
Sbjct: 263 LQQKLKKARTEEQQQAAFHVSDVATLHAHAAAAAAARHDEVS 304


>02_04_0160 -
           20427774-20428217,20428301-20428402,20428503-20428595,
           20428675-20428860,20428966-20429213,20429292-20429412,
           20430674-20430718,20431086-20431138,20431152-20431173
          Length = 437

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALE 208
           +N   Q+  R  A  +  +  +A + HQ AA LL +  KLT   L L+
Sbjct: 334 INEGAQERYRVHAQAEASQ-QQANEAHQQAAALLEEVQKLTVENLQLK 380


>10_08_0435 +
           17905728-17905901,17906608-17906931,17907205-17907321,
           17908418-17908597,17909064-17909190,17909327-17909440,
           17909794-17909909
          Length = 383

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 89  RRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLKSTKK 268
           RR EAH K   YDEA+   +   EL     +   S   LE +  +    +K++ +   K 
Sbjct: 291 RRGEAHEKLEHYDEAIADMKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLKD 350

Query: 269 SNMSEL 286
              S L
Sbjct: 351 LGNSVL 356


>09_02_0524 -
           10207711-10208154,10208237-10208338,10208439-10208531,
           10208612-10208683,10208730-10208798,10208928-10209175,
           10209256-10209370
          Length = 380

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALE 208
           +N   Q+  R  A  +  +  +A + HQ AA LL +  KLT   L L+
Sbjct: 277 INEGAQERYRVNAQAEAAQ-QQANEAHQQAAALLEEVQKLTVENLQLK 323


>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
            1342225-1342799,1343596-1343703,1345823-1346155,
            1346783-1349306
          Length = 1630

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 182  TSLHQQE-VRQHFDDIALLHHICDSSSELQHDDV 84
            TS+   E +  HFDD  LL H+C    +   D++
Sbjct: 1569 TSIGDSELIDDHFDDNFLLQHLCSEIMDFSGDNI 1602


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,201
Number of Sequences: 37544
Number of extensions: 197106
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)