Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1208
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_755| Best HMM Match : MIT (HMM E-Value=0.055)                       31   1.3  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      30   2.3  
SB_44277| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        28   9.5  

>SB_755| Best HMM Match : MIT (HMM E-Value=0.055)
          Length = 146

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 122 YDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQ-HSYHLKQKDLKSTKK 268
           Y EA+ C+Q    LL+  +K TT+ +       Q +SY  + ++LK T K
Sbjct: 22  YSEALVCYQEGIGLLLQVVKSTTNEITKTRYKEQLNSYFERAENLKRTVK 71


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 238 KTKRFKKYKKEQYVRVKKAMDTIKRLGKEPISNLQGHDYAQLQIAIYRAINE 393
           +TK+FK+  ++   + KK +D++ R+  E IS L G +  +    +Y+ I E
Sbjct: 706 ETKKFKQKVEKSKQKAKKTLDSVLRM--ELISELSGEEIGKAN--VYKTIEE 753


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +2

Query: 68  NLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITL 220
           +L H   R+   H ++H   + +QCHQ    +++  + +   T++    ++
Sbjct: 86  SLQHHHQRQRHRHHQHHHQLQYIQCHQHHYSIIISVIDIINITISFSIFSV 136



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +2

Query: 80  QQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 202
           Q H +   H ++H   + +QCHQ    +++  + +   T++
Sbjct: 167 QHHHQRHRHRQHHHQLQYIQCHQHHYSIIISVIDIINITIS 207


>SB_44277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 59  HPLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAE-LLVDAM 178
           H  +  +  H+ AEA LK+   +E M+C Q+ +E + VD++
Sbjct: 67  HGKSDGNSDHKEAEALLKSKHAEETMKCLQNISEKMAVDSL 107


>SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLT-TSTLALEAITL 220
           P +  H  HR  + H  NHRY    Q HQ    + +  +K+T T T+ +  I +
Sbjct: 39  PSSKDHHDHRHLDHHHHNHRY-RNRQYHQ-ITTITITIIKITITITITITTIAI 90


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 591 KDENATLKEKVNYLEKERA 647
           K+E  +LK+K+ YLEK+RA
Sbjct: 370 KEEIKSLKDKIRYLEKKRA 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,032
Number of Sequences: 59808
Number of extensions: 245913
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)