Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1208
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    31   0.029
AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450 CY...    24   5.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   5.9  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 31.5 bits (68), Expect = 0.029
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 71  LAHQQHRRAEAHLKNHRYDEAMQC-HQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQK 247
           L+ QQ    E H+KN+R    + C H S+  LLV+   L T  L+L         H+ QK
Sbjct: 670 LSVQQLNNVEEHVKNYRPQILVLCGHPSSRPLLVNFAYLLTKKLSLLVCGHVTKTHVSQK 729


>AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450
           CYP12F2 protein.
          Length = 522

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 83  ADVPSLVDEIPFWCHPFTF 27
           ADVPS+ D  PF   PF F
Sbjct: 446 ADVPSVKDSNPFIFLPFGF 464


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 217 AATQLSLKTKRFK-KYKKEQYVRVKKAMDTIKR 312
           A T  ++ T R   + KK++YV +K+A  T++R
Sbjct: 357 AKTDSTIDTYRADIESKKQEYVALKEAYGTVRR 389


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,206
Number of Sequences: 2352
Number of extensions: 8147
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)