Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1208
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011707-1|AAH11707.1|  287|Homo sapiens nuclear receptor bindin...    65   2e-10
AY267840-1|AAP03082.1|  287|Homo sapiens comodulator of PPAR and...    65   2e-10
AY267839-1|AAP03081.1|  237|Homo sapiens comodulator of PPAR and...    65   2e-10
AL590502-2|CAO03491.1|  287|Homo sapiens nuclear receptor bindin...    65   2e-10
AL136656-1|CAB66591.1|  287|Homo sapiens hypothetical protein pr...    65   2e-10
AK054957-1|BAB70833.1|  287|Homo sapiens protein ( Homo sapiens ...    65   2e-10
AF267866-1|AAG44735.1|  277|Homo sapiens hNRBF-2 protein.              65   2e-10
DQ414820-1|ABD72916.1|  235|Homo sapiens HBV DNAPTP1-transactiva...    30   7.9  
BC029911-1|AAH29911.1|  209|Homo sapiens C9orf119 protein protein.     30   7.9  
AL590708-24|CAI13844.1|  162|Homo sapiens chromosome 9 open read...    30   7.9  
AL590708-23|CAI13843.1|  209|Homo sapiens chromosome 9 open read...    30   7.9  
AL590708-20|CAI13840.1|  144|Homo sapiens chromosome 9 open read...    30   7.9  

>BC011707-1|AAH11707.1|  287|Homo sapiens nuclear receptor binding
           factor 2 protein.
          Length = 287

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>AY267840-1|AAP03082.1|  287|Homo sapiens comodulator of PPAR and
           RXR 2 protein.
          Length = 287

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>AY267839-1|AAP03081.1|  237|Homo sapiens comodulator of PPAR and
           RXR 1 protein.
          Length = 237

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>AL590502-2|CAO03491.1|  287|Homo sapiens nuclear receptor binding
           factor-2 protein.
          Length = 287

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>AL136656-1|CAB66591.1|  287|Homo sapiens hypothetical protein
           protein.
          Length = 287

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>AK054957-1|BAB70833.1|  287|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30395 fis, clone BRACE2008385, highly similar to
           Rattus norvegicus NRBF-2 mRNA for nuclear receptor
           binding ).
          Length = 287

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>AF267866-1|AAG44735.1|  277|Homo sapiens hNRBF-2 protein.
          Length = 277

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +2

Query: 62  PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 241
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 242 Q 244
           Q
Sbjct: 67  Q 67


>DQ414820-1|ABD72916.1|  235|Homo sapiens HBV DNAPTP1-transactivated
           protein A protein.
          Length = 235

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISN 728
           LKEK + L+KE +++++ G S ++L  + T L   NDI +
Sbjct: 166 LKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKD 205


>BC029911-1|AAH29911.1|  209|Homo sapiens C9orf119 protein protein.
          Length = 209

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISN 728
           LKEK + L+KE +++++ G S ++L  + T L   NDI +
Sbjct: 140 LKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKD 179


>AL590708-24|CAI13844.1|  162|Homo sapiens chromosome 9 open reading
           frame 119 protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISN 728
           LKEK + L+KE +++++ G S ++L  + T L   NDI +
Sbjct: 93  LKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKD 132


>AL590708-23|CAI13843.1|  209|Homo sapiens chromosome 9 open reading
           frame 119 protein.
          Length = 209

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISN 728
           LKEK + L+KE +++++ G S ++L  + T L   NDI +
Sbjct: 140 LKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKD 179


>AL590708-20|CAI13840.1|  144|Homo sapiens chromosome 9 open reading
           frame 119 protein.
          Length = 144

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 609 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISN 728
           LKEK + L+KE +++++ G S ++L  + T L   NDI +
Sbjct: 75  LKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKD 114


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,948,815
Number of Sequences: 237096
Number of extensions: 1134811
Number of successful extensions: 3253
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)