Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1208
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    30   1.6  
AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   6.3  
AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 211 YYAATQLSLKTKRFKKYKKEQYVRVKKAMDTI-KRLGKEPISNLQGHDYAQLQI 369
           +YAA +       + +Y KE  V   + M+   KR+G++ +++  GH+   LQI
Sbjct: 354 HYAAVEFLKVQNNYVQYLKEMAVLYPEYMERFGKRVGRDLLASHNGHENVVLQI 407


>AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical
           protein CD4.5 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +1

Query: 34  NGWHQNGISSTKLGTSATSSC*SSLEESQI**SNAMSSKCCRTSC*CNEVNDFYFGFRGY 213
           NG   N  SS       TS+  S LE SQ+  +    S C   +C  N+ +  +FG  G 
Sbjct: 137 NGLEDNDASSAITVQKITSTASSILESSQV--NVKELSSCSALTCTFNDGDSCFFGLSGV 194

Query: 214 YAATQLSLKTK 246
            +    SL  +
Sbjct: 195 GSTAAWSLSDR 205


>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 320 FPNRLIVSMAFLTLTYCSFLYFLNLFVL 237
           F +R+I+   F  + Y   +Y+LNLF+L
Sbjct: 48  FASRIILLQGFYIVAYAVGIYYLNLFLL 75


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 92  RAEAHLKNHRYDEAMQCHQSAAELLVD 172
           RAEAH+ +  YD A++ +Q A E+  D
Sbjct: 331 RAEAHILDEDYDSAIEDYQKATEVNPD 357


>AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical
           protein Y17G9A.2 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 338 RLDIGSFPNRLIVSMAFLTLTYCSFLYFLNLFVL 237
           RLD  S P++ +V +  L+L  C+F  F + F+L
Sbjct: 6   RLDDSSCPSQTLVVLTLLSLFLCAFTAFGSAFLL 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,448
Number of Sequences: 27780
Number of extensions: 205319
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)