Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1208
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    32   0.36 
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    30   1.5  
At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family...    29   2.5  

>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 38  DGTKMESHPLNLAHQQHR-RAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAI 214
           D  +M SH LNL   +     +A      Y    +CH+  ++  VD ++ ++S      +
Sbjct: 124 DIPEMHSHKLNLLKDRVEFDCDAKCGKIGYGFPYECHECDSKFHVDCVRYSSSEEVKHPL 183

Query: 215 TLQHSYH 235
            + HSYH
Sbjct: 184 EVNHSYH 190


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 229 LSLKTKRFKKYKKEQYVRVKKAMDTIKRLGKEPISNLQG 345
           ++ K   F+K+++E+  R KKA D   RL +E + + QG
Sbjct: 6   ITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQG 44


>At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 561

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 233 HLKQKDLKSTKKSNMSELKKPWIQ 304
           H K KD+ +T K+ +S +K+ WIQ
Sbjct: 187 HAKAKDVANTAKNIISSMKRDWIQ 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,602
Number of Sequences: 28952
Number of extensions: 181442
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)