Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1207
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    30   0.31 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.71 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    29   0.94 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   5.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    26   6.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   6.6  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.7  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.7  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 423 SGCGRCRVWSMFVRYVRFSELVF*YNAASKLYIF 524
           +GCG+  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 606 ARKIRGRPENAGPDPVRNVRRFSRV 532
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -3

Query: 301 DLLRIWVRTGATSPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 122
           D+LR+  R  A +P  PSP  S S+E   TP   + +S+     P +  +  RTL+   K
Sbjct: 73  DILRMLSRALAKNP-VPSPAESESSERRHTP---QTNSQKSQKTPRLSSNKRRTLKNDAK 128


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/90 (24%), Positives = 41/90 (45%)
 Frame = -1

Query: 684 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVLR 505
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+       +  +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 504 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 415
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 202 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 65
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 150 PWNPIEGRYGSEREEHRICGGVRILSADLENSGEGVRGDVAP 275
           P+ P+EG Y + ++ HRI    R   A LE    GV+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 620  RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQF*GRIILKY*LAKTNITHE 456
            + D +LG + A   + +V + S+  D  +E H+KY+Q   +  L+  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 460 TNIDQTRHRPHPLPVQTRHAPV 395
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 348 FPYLHYSID*RLFTLETCCGYGYEPARHL 262
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,335
Number of Sequences: 5004
Number of extensions: 68410
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)