Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1207
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60230.1 68414.m06783 radical SAM domain-containing protein  ...    30   1.9  
At5g18190.1 68418.m02135 protein kinase family protein contains ...    29   2.5  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.5  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.3  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.3  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.4  
At5g42370.1 68418.m05159 expressed protein                             29   4.4  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.4  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.8  

>At1g60230.1 68414.m06783 radical SAM domain-containing protein
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 458

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 118 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPC 14
           F D+ +AS G     R+ L   D+G +IETV +PC
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIPC 191


>At5g18190.1 68418.m02135 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 691

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 283 VRTGATSPRTPSPEFSRSAESIRTPPQ 203
           +R+GA   R PSP+ +  A++I  PPQ
Sbjct: 4   LRSGARRLRQPSPQVTGQADNIELPPQ 30


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 444 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 349
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 510 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 334
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 510 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 334
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 231 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 97
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 170 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 60
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 33  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 164
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 226 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 128
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,956
Number of Sequences: 28952
Number of extensions: 383278
Number of successful extensions: 1173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)