Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1206
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.055
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.51 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.51 
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    30   2.1  
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.1  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   4.8  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   8.3  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_18550| Best HMM Match : DUF987 (HMM E-Value=4.4)                    28   8.3  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 419 DVVAVSQAPSPESNPDSPLPVTTM 348
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 410 AVSQAPSPESNPDSPLPVTTM 348
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLSASRIKAIPRMA 82
           PVVICLSQRLSHACLS S      RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +2

Query: 500 EASNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 667
           + + R    ++++ R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 47  QTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLSASRIKAIPRMA 82
           PVVICLSQRLSHACLS S      RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +2

Query: 542 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 667
           R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 409 PFLRLPLRNRTLIPRYP 359
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 9    LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +2

Query: 554 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 667
           RASL            Y K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +2

Query: 401 EKRLPHPRKAA---GAQITHSRHGR**RKITIRDSYEASNRNEYTLNILTRNNWRASLXX 571
           E+R   P + A    ++ T  R G+   +  +RD+  AS+     L I+ R   R +   
Sbjct: 25  ERRREEPVQGAFCRSSRFTFERRGKEKDRGRLRDN--ASSAQAILLEIVKRKVTRKATCA 82

Query: 572 XXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 667
                     Y K+VAVKKLVV F    VG P
Sbjct: 83  RCFAA-----YIKVVAVKKLVVGFRDGTVGPP 109


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 542 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 667
           R    ASL            Y K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 602 YTKIVAVKKLVVAFVRRAVGAP 667
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 602 YTKIVAVKKLVVAFVRRAVGAP 667
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 640 CNYELFNRNNFSIRYWSWNYRGCWH 566
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 428 PSLDVVAVSQAPSPESNPDSPLP 360
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 679 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 581
           S R+RCT S + KC     + + F    W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180


>SB_18550| Best HMM Match : DUF987 (HMM E-Value=4.4)
          Length = 159

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 401 EKRLPHPRKAAGAQITHSRHGR**RKITIRDSYEASNRNEYTL 529
           EKRL        A     R GR  R + +R S + SNR +Y L
Sbjct: 99  EKRLHRGSPVVLAMFADKRAGRTGRAVRVRQSRKRSNRPKYVL 141


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 228  RPKSLILMNWITFADRMVKYRRRIFQM 308
            R +  +   W TF DR +KY R +F++
Sbjct: 1005 RKEGAMKKRWFTFKDRQLKYYRGVFKV 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,622,505
Number of Sequences: 59808
Number of extensions: 447573
Number of successful extensions: 1274
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)