Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1205
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.0  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   3.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   4.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 64  YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 198
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 347 LANFVRNDRKSRH-RRIKKQRRYERLAAT 264
           LANF+R DR+S H    +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
 Frame = -1

Query: 753 LRSRDARVKKKTDSIDLRDPNGLRRRVSRFEC--ETRLVKSHCLEPPDSRGSTVSISLPD 580
           +++  A++ +   S+ +R P+ ++  +S        R   ++ + P  S       S+  
Sbjct: 347 VKNSSAKIVRPGTSLGVRSPSRIQSTLSSRTTTGNVRTKAANIVRPSSSINRRPPSSI-- 404

Query: 579 SARLASALEAFRHNPADGSSHHRPSAECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSH 400
           + R  S L     + +  + H RPS+  +++ + +      S+ T+ATT        L  
Sbjct: 405 NQRPPSNLRILAPSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPTLVE 464

Query: 399 DGLIPAHVP 373
              +  H P
Sbjct: 465 SSTVVHHDP 473


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 216 LYTKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 46
           L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184

Query: 45  PPGSVLE 25
           PP SV+E
Sbjct: 185 PPASVIE 191


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 264 CGSQAFIATLLFDPSMSALPIIANKIRQAL 353
           CGS   I  +LF  S S L   + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 181  SPYAY*TSGSSQLLPFCSTRGF 116
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,346
Number of Sequences: 5004
Number of extensions: 69223
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)