Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1205
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216... 32 0.44
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 31 0.78
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
03_05_0183 - 21681673-21682524 31 1.4
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014 30 2.4
07_03_0846 - 21983581-21986055 29 3.1
07_03_0626 + 20060013-20060273,20061017-20061274 29 4.1
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 4.1
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 29 5.5
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 29 5.5
10_08_0996 - 22112020-22112859 28 9.6
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 28 9.6
>01_07_0370 -
43119049-43120278,43121376-43121420,43121421-43121662,
43121908-43122686,43123123-43123463,43123565-43123785,
43123866-43124176,43124257-43124516,43124836-43124918,
43124940-43125036,43125132-43125305,43126215-43126592
Length = 1386
Score = 32.3 bits (70), Expect = 0.44
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = -1
Query: 768 LSISGLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 589
L++ GL + R ++ + R P + S F+ E SH + S+ ++S
Sbjct: 601 LNLDGLYAELLRCEEAA-KLPKRTPIRNYKEPSSFQIERDSSASHSFQ----ESSSPNMS 655
Query: 588 LPDSARLASALEAFRHNPADGSSHHRPSAEC--MNQMSETAVPLVLS 454
S + AFR++ A+ +SH P+ + QM+ET +P V S
Sbjct: 656 KSPSLQKTHGFLAFRNSDANHNSHESPNIQSPPSEQMAETRLPTVAS 702
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -2
Query: 455 AVLLSQRQAISRVKLTCL-TTV*SQLTFPFDG*TIQRLANFVRNDRKSRHRRIKKQRRYE 279
AV+L Q + L L T++ SQL+F +++R+ ++ D +HRR K +++
Sbjct: 745 AVVLCQVEKAKEGMLNQLYTSISSQLSFVVSMRSVERIEELIQEDHSVKHRREKIKKQSS 804
Query: 278 RLAATSQL 255
L+ ++L
Sbjct: 805 LLSKVTRL 812
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 566 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 700
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>03_05_0183 - 21681673-21682524
Length = 283
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 270 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLDRRETG 410
SQAF A LL D + +A+P++ + R A + + + E E RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274
>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
Length = 135
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 428 WLVVAIVILLSTRGTAVSDIWFMHSAEGRWCELPSAGLCLNASKAEASLAESGKDMLTVE 607
WL V ++ S + +A+ +W + A + P A + A A+L + +
Sbjct: 64 WLEVVGRVVGSDKASAMESLWKVVGA-AKHGGGPVAAMARQLPSALATLGAATVPVGASG 122
Query: 608 PRESGGSKQC 637
PR+SGGS++C
Sbjct: 123 PRDSGGSRRC 132
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 708 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 559
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 578 RLGWLRP*RRSGIIPRMVVRTTGP 507
RLGWLRP R S ++P GP
Sbjct: 32 RLGWLRPSRLSAVVPASESGRVGP 55
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 234 HLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVP 61
+L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 579 NLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAP 634
Query: 60 PQSNSPPGSVLE 25
+ PG L+
Sbjct: 635 NRGGKAPGDSLD 646
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -1
Query: 621 PDSRG--STVSISLPDSARLASAL----EAFRHNPADGSSHHRPSAECM 493
PDS S + +L RLA AL EA R +PA G +H R +A C+
Sbjct: 249 PDSAACRSNRAAALIGLGRLAEALRECEEAIRRDPASGRAHSRLAALCL 297
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 557 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 730
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 731 TRASRLRSPDILS 769
TRA+R +SP L+
Sbjct: 64 TRAAR-QSPHKLA 75
>10_08_0996 - 22112020-22112859
Length = 279
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 270 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLDRRETG 410
+QAF A LL D + +A P++ + R A + + + E E RR TG
Sbjct: 225 AQAFSAVLLADANRTASPVVVVQKRAAPE-TETETEEEPPRQRRRTG 270
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -1
Query: 633 CLEPPDSRGSTVSISLPDSARLASAL----EAFRHNPADGSSHHRPSAECM 493
C E RG+ + +L RLA AL EA R +PA+G +H R + C+
Sbjct: 245 CPESAACRGNRAA-ALAGLGRLADALRDCEEAVRLDPANGRAHSRLAGLCL 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,030,212
Number of Sequences: 37544
Number of extensions: 512730
Number of successful extensions: 1445
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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