Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1205
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 141 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 10
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 442 DSNTAQYERNRSFGHLVHALGRGPVVRTTIRGI 540
           D NT+Q  +     H V   G+G +V  T++ +
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKGELVSLTVQAM 195


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 258 LACGSQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRER 380
           + CG Q F A   F    +AL    N+I +  + S    +R
Sbjct: 719 IVCGIQRFAAGFCFTVVYAALLTKTNRISRIFNASKHSAKR 759


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 518 TTGPRPSA*TKCPKLRFLSY*AVLLSQRQAISRVKLTCLTTV*SQL 381
           T GPR S  ++CP L+ L    VL S     S +  T  T V + L
Sbjct: 301 TGGPRKSHESQCPMLQKLEK-PVLSSSTTTTSPMTSTKSTIVRNHL 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,230
Number of Sequences: 438
Number of extensions: 4806
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)