Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1205
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67040.1 68414.m07624 expressed protein ; expression supporte...    33   0.16 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.5  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    29   4.6  
At4g26190.1 68417.m03770 expressed protein                             28   6.0  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    28   8.0  

>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 31/129 (24%), Positives = 52/129 (40%)
 Frame = -1

Query: 777 DIELSISGLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTV 598
           D  +S+SG  S D  VKK       +D   L    +R E   +++      PP++R    
Sbjct: 318 DSSVSVSGKDSTDQMVKKALHRAQFKDEMSLPGYRNRSEYHKKVLHREERFPPEAR---- 373

Query: 597 SISLPDSARLASALEAFRHNPADGSSHHRPSAECMNQMSETAVPLVLSSITIATTSHQ*G 418
           S +LP     +S   A      D  + +R S    +  S++ V    S + +   SH   
Sbjct: 374 SFALPSKRSCSSPANAINSKEKDFIAMNRGSTS-RSHHSKSPVKFENSDLNLQRKSHTRV 432

Query: 417 KTNLSHDGL 391
           + + +  GL
Sbjct: 433 EESCNRSGL 441


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 103 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 216
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 506 EGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 640
           +G W +L         +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 285 DGAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 661  FKTRDATSKPIWIAEIDAIGFFLNTCITAPKSGYTQ 768
            FKT++   KP+++ ++  +   + TCI+  K  Y +
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYDE 979


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 237 WHLLLKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 67
           +H+L+  L+T  S+  + F    +   +DQA  C   P + S   E+   H R  +TD
Sbjct: 61  FHILV-LLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,583
Number of Sequences: 28952
Number of extensions: 385725
Number of successful extensions: 1054
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)