Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1204
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0922 - 33022709-33023545                                         29   2.9  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    29   5.0  

>01_06_0922 - 33022709-33023545
          Length = 278

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 134 SRDVKRSRTVPTENERTKRTFRQHLN-ARKRTPERKR*ISP 15
           SR  + S + P   E+  R+ R+  + A KRTPE++R  SP
Sbjct: 159 SRSARASASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASP 199


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 333  PARRKSTSYFLVSCLSADASATRLLSQPCSLGLVRVCLNVCD 458
            P RRK  S  L       +S    LSQ C+ G++ + L++CD
Sbjct: 1319 PNRRKGESQELKQINPLHSSHLHALSQACAPGVILMPLDLCD 1360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,001
Number of Sequences: 37544
Number of extensions: 344122
Number of successful extensions: 776
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)