Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1204
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.55 
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   31   0.73 
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.2  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   29   2.9  
SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)                  29   2.9  
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014)          29   5.1  
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       28   6.8  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)              28   9.0  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)              28   9.0  

>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
 Frame = -3

Query: 212 RTVSRAIVLNPRRTGRDALLREKCTSSRDVKRSRT----VPTENERTKRTFRQHLNARKR 45
           R+ SR+  LN +R+ R    R + ++SRD KRSR+     P   ER K    +H  +R +
Sbjct: 237 RSRSRSATLNQKRS-RSKHSRSR-SNSRDQKRSRSRRSHTPPSEERPKSRLYRH--SRSK 292

Query: 44  TPERKR*ISP 15
           + ERK   SP
Sbjct: 293 SKERKTLKSP 302


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 460 SSQTFKQTRTSPRLHGCDNRRVALASALRQETRKYDVDLRR 338
           +S  +  T+ SP +      R  LA  LRQ T  Y+ +LRR
Sbjct: 474 TSPQYTLTKVSPEMEALVRERNDLARELRQRTEAYEAELRR 514


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
 Frame = -2

Query: 450  RSNKHALVRDCTAATTDASHSRPH*GRKRENTTLTCVGPDAYEKIFFRNFQRVRD*FNDT 271
            R+N H + RD    T D SH     G  R+N+ +   G +++E I   N   +R+  +  
Sbjct: 1593 RNNSHGITRDNNVLTRDNSH-----GITRDNSHVLTRG-NSHE-ITRDNSHGIRNNSHGI 1645

Query: 270  VRMRGWNDTR-SERVLNE*NSYGLPRDRLKSTTNGSRCITKREVHVFS 130
             R      TR +   +   NS+G+ RD    T + S  IT    HV +
Sbjct: 1646 TRDNSNVLTRDNSHGITRDNSHGITRDNNVLTRDNSHGITWDNSHVLT 1693


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -3

Query: 224 TNKTRTVSRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKR 45
           + K R  SR+  L+ RR  +      K  S RD  RSR   +   ++ R  +++  +R R
Sbjct: 272 SRKHRHRSRSSSLSSRRRSK-----HKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSR 326

Query: 44  TPERKR 27
           + ER+R
Sbjct: 327 SSERRR 332


>SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)
          Length = 269

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = -3

Query: 251 TIRGPNVF*TNKTRTVSRAI------VLNPRRTG-RDALLREKCTSSRDVKRSRTVPTEN 93
           T R PNV   NKTRT +         V  PR    R      KCT+++  K + T P   
Sbjct: 19  TPRHPNVRTRNKTRTRTYTHPDAPIHVHAPRHANVRTRTQTRKCTNTQTRKCTYTHPDIQ 78

Query: 92  ERTKRTFRQHLNARKRTPERK 30
           +       +H NAR+RT  RK
Sbjct: 79  KHVHAP--RHANARRRTKTRK 97


>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -1

Query: 727 GIVHHLSGPSICA 689
           GIVHHLSGP+ CA
Sbjct: 17  GIVHHLSGPNRCA 29


>SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014)
          Length = 351

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 152 REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 33
           R +C  +R +KR R + T +  T + FR+ L+  ++  ER
Sbjct: 11  RLRCKITRAIKRIRNLTTTDTTTAKRFRKELDQLRKDFER 50


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 119 RSRTVPTENERTKRTFRQHLNARKRTPERKR 27
           +SRT P    R++   ++H  ++ RTP R R
Sbjct: 67  KSRTPPRHRRRSRSPNKKHSRSKSRTPPRHR 97


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -3

Query: 155 LREKCTSSRDVK---RSRTVPTENERTKRT 75
           +R K T S+ VK   RSR +PTE E+T R+
Sbjct: 421 IRAKETGSQKVKSKIRSRDLPTEKEKTSRS 450


>SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
          Length = 118

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 179 RRTGRDALLREKCTSSRDVKRSRTVPTENERT 84
           R    D +LREK   S D+   RT+P  N  +
Sbjct: 34  RERNSDVILREKRRGSEDLMTGRTIPFANRNS 65


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 345  CVGPDAYEKIFFRNFQRVRD*FNDTVRMRGWNDTRSERVL--NE*NSYG 205
            C G D YE++   ++ R ++  N++VR    ND  ++  L  N+  S+G
Sbjct: 1615 CEGIDPYEEVVHLSWSRNKEATNESVRADSINDENNQLSLCRNDEQSFG 1663


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -3

Query: 179  RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 27
            R+  R    R K    R  KR R      +R +R  RQ    RKR  +RKR
Sbjct: 1040 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKR 1090



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -3

Query: 179  RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 27
            R+  R    R K    R  KR R      +R +R  RQ    RKR  +RKR
Sbjct: 1082 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKR 1132


>SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
          Length = 118

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 179 RRTGRDALLREKCTSSRDVKRSRTVPTENERT 84
           R    D +LREK   S D+   RT+P  N  +
Sbjct: 34  RERNSDVILREKRRGSEDLMTGRTIPFANRNS 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,589,569
Number of Sequences: 59808
Number of extensions: 442765
Number of successful extensions: 1364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)