Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1203
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.5  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 666 GDWGLQLSPINEEFLVSASHK 728
           G  G+Q+SP NE  +V++S++
Sbjct: 52  GFGGVQISPPNENLVVTSSNR 72


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 666 GDWGLQLSPINEEFLVSASHK 728
           G  G+Q+SP NE  +V++S++
Sbjct: 53  GFGGVQISPPNENLVVTSSNR 73


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 666 GDWGLQLSPINEEFLVSASHK 728
           G  G+Q+SP NE  +V++S++
Sbjct: 53  GFGGVQISPPNENLVVTSSNR 73


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 589 TRATLKESACSPWPRGR 639
           TR TLK +  SP+P  R
Sbjct: 256 TRTTLKNNRASPYPMQR 272


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 420 RYRN*PDKSLHQLRTAMHHH 361
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,184
Number of Sequences: 336
Number of extensions: 3920
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)