Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1203
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.92 
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   3.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   6.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   6.5  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   8.6  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   8.6  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 354 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 497
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 683 LQTPIPSTKEFQRVARPLGQGEHADSFSVAR 591
           LQTP+PS  E  R   P   G+ A    +A+
Sbjct: 306 LQTPVPSDIEIARSQTPKNIGDLASEIGIAK 336


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 402  DKSLHQLRTAMHHHPPNQERAVNLSILPV 316
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 368 TTTHRIKKELLICQSFRCPGLVRFPVLGQIKP 273
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 333 LSILPVSGPGEISRVGSN*AAGST 262
           +SIL V+GP +  R+G +   G T
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGT 237


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 15  SSQENISESICQRCFHQSRTKVRGSKA--IRY 104
           +S+ N    IC  CFH +     G KA  +RY
Sbjct: 191 NSENNREALICSHCFHHNGLASYGEKASDVRY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,592
Number of Sequences: 5004
Number of extensions: 64242
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)