Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1203
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0598 - 4443474-4443917                                           28   6.8  
07_01_0130 - 963856-965454                                             28   6.8  
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195...    28   6.8  

>07_01_0598 - 4443474-4443917
          Length = 147

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 268 LHSWC-ALPSIPLSFSFATILPPESKIFGFPEAARRAIV 155
           + SW  A+P+ P     AT LPP     G P+AAR A+V
Sbjct: 24  MESWMVAVPAAP-----ATPLPPHEPSTGAPDAARAAVV 57


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 390 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 292
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,
            1957954-1958041,1958143-1958324,1958508-1958644,
            1958790-1958856,1959132-1959246,1959390-1959501,
            1960420-1960495,1960576-1960758,1961166-1961326,
            1961463-1961532,1962721-1962928,1963015-1963304,
            1963388-1963509,1963605-1963749,1964040-1964113,
            1964464-1964911
          Length = 1274

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 280  LSRRLHSWCALPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSADR*MTYLRLEL 110
            L +R+H   +L ++  + S     PPE   F +P A R  ++ ++  R +  L ++L
Sbjct: 1047 LQKRVHELVSLGNLETAVSLLLSTPPEGSNF-YPNALRAVVLSSAVSRSLHELAVKL 1102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,594,876
Number of Sequences: 37544
Number of extensions: 528985
Number of successful extensions: 1356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)