Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1203
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    29   2.6  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   4.6  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    28   8.0  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 257 VCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 150
           +CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 202 MCPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 9   LGSSQENISESICQRCFHQSRTKVRGS 89
           L  + E +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 353
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 234 KGIDGRAHQEWSLRLNLTQHGKSHQARTP 320
           K  + + H +W ++ NL +HG ++ A  P
Sbjct: 689 KSKEWQDHMDWHVKQNLARHGSNNSAAVP 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,133
Number of Sequences: 27780
Number of extensions: 395884
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)