Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1203
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 167 PSHCSNVGGSLDDIFTVRTRAVSNRLRTSNFRS*LMKTPLANAFADVLL 21
           P+   NV  S  D+F    R+V  ++R  N +       ++    D+LL
Sbjct: 143 PTFHLNVLKSFIDLFNANARSVVEKMRKENGKEFDCHNYMSELTVDILL 191


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/33 (21%), Positives = 21/33 (63%)
 Frame = -1

Query: 659 KEFQRVARPLGQGEHADSFSVARVRPRTSKGIT 561
           ++F++ A+ +G+G    ++ + +++    +GIT
Sbjct: 40  EKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 72


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/33 (21%), Positives = 21/33 (63%)
 Frame = -1

Query: 659 KEFQRVARPLGQGEHADSFSVARVRPRTSKGIT 561
           ++F++ A+ +G+G    ++ + +++    +GIT
Sbjct: 40  EKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,829
Number of Sequences: 438
Number of extensions: 4835
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)