Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1203
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67020.1 68414.m07620 hypothetical protein                          29   2.5  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    29   3.3  
At2g22790.1 68415.m02703 expressed protein ; expression supporte...    29   3.3  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   7.5  
At3g42120.1 68416.m04325 hypothetical protein                          27   9.9  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   9.9  
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    27   9.9  

>At1g67020.1 68414.m07620 hypothetical protein
          Length = 659

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 153 TTMARRAASGKPKILDSGGSMVAKLKLKGIDGRAHQEW 266
           ++M +R A   P +LD+  S++ ++++   DG    EW
Sbjct: 86  SSMPQRGAGESPILLDNRSSLIRRIEMPVFDGSGVYEW 123


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +1

Query: 94  RLDTALVLT---VNMSSSDPPT-LLQWLGGQLPGNQRFWTPGGVWLQS*NLKELTEGHTR 261
           RL  A +LT      SSS P T  + W  G  P  +   T  G W+Q     ++ EG   
Sbjct: 177 RLFVARLLTFIPARFSSSQPSTDRVVWSIGSKPVAENNKTNSGSWVQKYGTNDMYEGEFH 236

Query: 262 SGAC 273
            G C
Sbjct: 237 RGKC 240


>At2g22790.1 68415.m02703 expressed protein ; expression supported
           by MPSS
          Length = 325

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 281 IKPQAPLLVCPSVNSFKFQLCNHTPPGVQN 192
           + P +P+     VN FK Q  NH  PG+ N
Sbjct: 25  VNPSSPVYYKTIVNHFKSQTGNHVSPGLTN 54


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 224 LCNHTPPGVQNLWFPGSCPP 165
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At3g42120.1 68416.m04325 hypothetical protein
          Length = 409

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -1

Query: 371 CTTTH--RIKKELLICQSFRCPGLVRFPVLGQIKPQAPLLVCPSVNSFKFQLCNHTPPGV 198
           C   H  +++ E LI   FR       PV     P APLL+ P     ++      PP  
Sbjct: 261 CVDRHPTQVEPEFLIRAGFRVEFTTDTPVTTVTSPTAPLLLDPPPKRLRYSSPPPKPPDF 320

Query: 197 QN--LWFP 180
            N  L FP
Sbjct: 321 INKSLKFP 328


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 73  RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 183
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 9   LGSSQENISESICQRCFHQS 68
           LG   E ++ +IC+ CFH S
Sbjct: 215 LGDKNERVAIAICEACFHSS 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,722
Number of Sequences: 28952
Number of extensions: 377205
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)