Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1201
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    27   3.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   4.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   7.0  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.2  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 640 SGSSQLLPFCSTRRVPSSNS*IMVIAVSCVKLLSAHNST 756
           S  S++ PF ++  +P S S + + +++ +KL   HNST
Sbjct: 77  SSGSKIYPFKNSFPLPFSRSILPIRSLAFLKLCVRHNST 115


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 630 VLNIWIKPAFALLLHAKGTELEFVNHGHSCFLCEIV---IRSQFH 755
           V++  +KP   LL H   ++++ ++ G SCF  E V   I+S+F+
Sbjct: 821 VIHCDLKPENILLCHPFKSQVKVIDFGSSCFEGECVYTYIQSRFY 865


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 612 LSQSLCVLNIWIKPAFALLLHAKGTELEFVNHGHSCFLCEIV---IRSQFH 755
           L Q   +++  +KP   LL H     ++ ++ G SCF  E V   ++S+F+
Sbjct: 634 LLQGQNIIHCDLKPENLLLSHPLKARIKLIDFGSSCFYNEKVYTYLQSRFY 684


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -1

Query: 575 ARGARKVTTGITGLWQPSVHSDVLFDPSMSALPIIAKQNSPSVGLFTHQKGT*AGFRPS* 396
           A GAR   T IT   Q S  S V  +P+ S      + N+P+    + +  T + F    
Sbjct: 145 ASGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQY 204

Query: 395 DRL 387
            RL
Sbjct: 205 GRL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,621
Number of Sequences: 5004
Number of extensions: 66012
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)