Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1200
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein. 29 2.7
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 28 6.3
>Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical
protein C23H4.1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 177 EPPDSRGSTVSISLPDSARLASALEASGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 356
+ P T+S D RLA++ E SG PR +S L V G+ Y
Sbjct: 263 QEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSLLLLAVGTVMCVGLIGTVAGGTY 322
Query: 357 YYRNDK 374
YY+N++
Sbjct: 323 YYKNNR 328
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 563 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 453
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 563 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 453
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 563 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 453
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 563 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 453
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 563 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 453
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 563 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 453
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 177 EPPDSRGSTVSISLPDSARLASALEASGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 356
+ P T+S D RLA++ E SG PR +S L V G+ Y
Sbjct: 263 QEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSLLLLAVGTVMCVGLIGTVAGGTY 322
Query: 357 YYRNDK 374
YY+N++
Sbjct: 323 YYKNNR 328
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 304 RPSGRWCEATIRGIMPDASKAEASLAESGKDMLTVEPRE 188
RPSG WC GI +AE + A G + ++ R+
Sbjct: 93 RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,377,987
Number of Sequences: 27780
Number of extensions: 354911
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -