Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1199
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   3.3  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   5.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.6  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 351 ITIFTSGSIGLSIWMESQTVDRTKVTFHSA 262
           + IFT  SI + IW  S++  R + +  SA
Sbjct: 218 VLIFTYTSICIEIWQSSESSLRPRSSQKSA 247


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 17  SRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 139
           SR     +  SK ++       +  L K++KT++PV   AL
Sbjct: 11  SRQKAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILAL 51


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 17  SRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 139
           SR     +  SK ++       +  L K++KT++PV   AL
Sbjct: 11  SRQKAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILAL 51


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 160 NMIKDWTESSRIYRSL 113
           N++ DW    RIY  L
Sbjct: 157 NVVTDWVNFERIYYKL 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,824
Number of Sequences: 336
Number of extensions: 2783
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)