Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1199
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51840| Best HMM Match : WD40 (HMM E-Value=8.3e-07) 142 2e-34
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 46 2e-05
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 40 0.002
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 35 0.042
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.042
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 35 0.042
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 35 0.042
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40) 33 0.13
SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 33 0.17
SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 33 0.17
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 33 0.22
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16) 33 0.22
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 32 0.29
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22) 32 0.39
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22) 31 0.51
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 31 0.68
SB_56394| Best HMM Match : WD40 (HMM E-Value=6.2e-10) 31 0.90
SB_42895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 31 0.90
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 30 1.2
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 30 1.2
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 30 1.6
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 29 2.1
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 29 2.1
SB_42181| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00013) 29 2.1
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15) 29 2.7
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 29 3.6
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14) 29 3.6
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 29 3.6
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 29 3.6
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 3.6
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93) 28 4.8
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 28 4.8
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 27 8.4
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 27 8.4
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 27 8.4
>SB_51840| Best HMM Match : WD40 (HMM E-Value=8.3e-07)
Length = 242
Score = 142 bits (344), Expect = 2e-34
Identities = 68/90 (75%), Positives = 77/90 (85%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQDA 184
D+Q+ +D TMFVTASKD TAKLFDT+SL LK YKT+RPVNSAALSPI DHVV+GGGQ+A
Sbjct: 59 DIQMYKDSTMFVTASKDTTAKLFDTDSLRHLKTYKTDRPVNSAALSPIKDHVVVGGGQEA 118
Query: 185 MEVTTTSTRQGKFDARFFHLVFEGSLAEWK 274
MEVTTTSTR GKFDARFFH+VFE + K
Sbjct: 119 MEVTTTSTRVGKFDARFFHVVFEEEIGRVK 148
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGK 321
E GRV+GHFGPINSLAFHPDG+
Sbjct: 143 EIGRVKGHFGPINSLAFHPDGR 164
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +1
Query: 211 TG*IRCSFLPLSI*REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQ 375
TG C LPL+ V GH I++++F PDG ASGG DG VRV +F Q
Sbjct: 160 TGAYECGILPLAACSR--SVRGHTDTIHTMSFSPDGTLLASGGMDGAVRVWDFGQ 212
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTF 396
+GH+ +N LA+ PDG A+GG+DG V++ N + TF
Sbjct: 1248 QGHYYDMNVLAYSPDGNYIATGGDDGKVKLWNTMTGFCFVTF 1289
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
GH P++SLAF P SG D VR+ N +S
Sbjct: 1377 GHEAPVSSLAFSPSHPVLISGAWDKTVRLWNVFES 1411
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
++GH +N L F PDG+ SGGEDG +V+ ++
Sbjct: 176 LKGHTDCVNHLRFSPDGRWIISGGEDGAAKVYGWE 210
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVH 363
GH I SL FHP G ASG D ++ H
Sbjct: 150 GHKSSIRSLDFHPFGDFVASGSLDTNLKGH 179
>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
+GH I +LA DGK ASGG+D +R+ + D S +TF +R+
Sbjct: 111 KGHKEQILALAITTDGKYLASGGKDKLIRIWDPDTSKHIHTFKGHRD 157
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 35.1 bits (77), Expect = 0.042
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILD--HVVLGGGQ 178
D+ + DGT F++A D KL+DT + E L Y ++ +P D H+ + G
Sbjct: 138 DVSFNNDGTQFLSAGYDRYVKLWDTETGECLGRYTNKKIPYCVKFNPDEDKQHLFVCGTS 197
Query: 179 DAMEVTTTSTRQGKFDARFFHLVFEGSL 262
D +T R + SL
Sbjct: 198 DKKILTVNRVTYSSTSDRIPEFSYASSL 225
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRV 360
GH + ++F+ DG + S G D YV++
Sbjct: 131 GHSKAVRDVSFNNDGTQFLSAGYDRYVKL 159
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 175 SRCYGSDNHINQTG*IR--CSFLPLSI*REFGRVEGHFGPINSLAFHPDGKSYASGGEDG 348
S Y D H G I + L+ + +EGH PI SL F PD + + +DG
Sbjct: 111 SLAYSPDGHYIACGAIDGIINIFDLTTNKLLHTLEGHAMPIRSLTFSPDSQLLITASDDG 170
Query: 349 YVRVHN 366
++++++
Sbjct: 171 HIKMYD 176
>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
Length = 584
Score = 35.1 bits (77), Expect = 0.042
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 259 FGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQ 375
+G ++ +FG + + + PDGK +GGED + V +F +
Sbjct: 309 YGVMKSYFGGLTCVCWSPDGKYVVTGGEDDLITVWSFHE 347
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
G IN +F PD K A +DGY+RV +FD
Sbjct: 275 GGINEFSFSPDCKHIALVTQDGYLRVFDFD 304
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 35.1 bits (77), Expect = 0.042
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
+EGH I+ + FHP+ +G EDG VRV + + + T +Y E
Sbjct: 123 LEGHAQNISCVGFHPELPIILTGSEDGTVRVWHANTYRLESTLNYGLE 170
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 34.7 bits (76), Expect = 0.055
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 32 MFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 145
+FVTAS D T +L+D S ++K+ T+ SAA SP
Sbjct: 1169 VFVTASDDRTIRLWDIPSKGMVKKTSTDVAARSAAFSP 1206
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 35 FVTASKDHTAKLFDTNSLELLKEYKTER 118
FVT KD L+D N LK+YK +
Sbjct: 668 FVTGGKDGMVSLWDENMSRCLKQYKVTK 695
>SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40)
Length = 400
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +2
Query: 23 DGTMFVTASKDHTAKLFDTNSLELLKEYKTE 115
D MF+T+S D T K++DTN+L++++ + E
Sbjct: 111 DSGMFLTSSVDRTLKVWDTNALQVVETFNFE 141
>SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRV 360
P+N++AFH ++A+GG DG+V +
Sbjct: 188 PVNAIAFHNMHNTFATGGSDGFVNI 212
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHNF 369
E H P+ L+F P YAS +DG V++ +F
Sbjct: 110 EAHKEPVRGLSFSPTDNKYASCADDGLVKIWDF 142
>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
Length = 611
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQ 375
R + H GP+ + FH + SGG+D ++V N+ Q
Sbjct: 46 RFDEHDGPVRGINFHTVQPLFVSGGDDYKIKVWNYKQ 82
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
+EGH +N +AFHP SG +D V++ + S
Sbjct: 203 LEGHDRGVNWVAFHPTMPLIVSGADDRQVKLWRMNDS 239
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
GH +N+LA +P G SG D +RV + D S
Sbjct: 223 GHLKAVNTLAIYPFGSYIMSGSSDNTIRVWSLDMS 257
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV---VLGG 172
T + ++DG + +S D+T +L D ++ ELL E+K + L L+H V+ G
Sbjct: 742 TSVTFTQDGQCILVSSLDNTVRLMDKDTGELLNEFKGHQN-KEYKLDSCLNHTDTHVISG 800
Query: 173 GQD 181
+D
Sbjct: 801 SED 803
>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
Length = 675
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFD 399
H + SLA HPDG++ ASG G+ V D + + D
Sbjct: 175 HTDDVKSLAVHPDGRTIASGQVAGHEEVQGEDHGRYIVSVD 215
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRVHN 366
GP+ +L P+G + GG+DG VR N
Sbjct: 286 GPVYALLVLPNGDLLSGGGKDGTVRAWN 313
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNF--DQSYFDYTFD 399
GH IN++AF P G ++ +G +D R+ + DQ Y+ D
Sbjct: 153 GHESDINAVAFFPSGFAFGTGSDDATCRLFDIRADQELMMYSHD 196
>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
Length = 834
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
+ S+DG TASKD + + D NS + K L I DH+V G +
Sbjct: 96 LAFSKDGLHLFTASKDKSLQAIDMNSGSIAHAIKKAHSCPVNCLKVISDHLVATGDDE 153
>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
Length = 442
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 17 SRDGTMFVTASKDHTAKLFDTNSLELLKE 103
+RDG++F T SKD +L D S +++KE
Sbjct: 117 NRDGSLFTTTSKDKKLRLVDPRSGKIVKE 145
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRV 360
G +NS+ FHP G A+GG D V++
Sbjct: 113 GFVNSVEFHPSGTCIAAGGTDSTVKI 138
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 384
R+ GH IN + F PDG+ AS D V++ N + F
Sbjct: 54 RMTGHQALINQVCFSPDGRLIASAAFDKSVKLWNGETGKF 93
>SB_56394| Best HMM Match : WD40 (HMM E-Value=6.2e-10)
Length = 183
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ GH +N F P G+ ASGG D +++
Sbjct: 35 QLSGHIADVNCCRFFPSGEVIASGGADFQIKI 66
>SB_42895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 30.7 bits (66), Expect = 0.90
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERP-VNSAALSPI-LDHVVLGGGQ 178
D+ S DG TAS D T L+D + +K K VNS S + +VV G
Sbjct: 2 DVHFSTDGNTMFTASTDKTVALWDYETGARMKRLKGHTSFVNSCCPSRRGMQYVVSGSDD 61
Query: 179 DAMEVTTTS 205
++VT +
Sbjct: 62 STIKVTAVA 70
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 17 SRDGTMFVTASKDHTAKLFDTNSLELLKEYK 109
+++G +TAS+DH KLFD +++ L+ ++
Sbjct: 14 NQNGNWLLTASRDHLLKLFDIRAMKELQAFR 44
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRV 360
GH +N +AFHP+ A+G D VR+
Sbjct: 165 GHVSDVNKVAFHPNCNYIATGSSDRTVRL 193
>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEY 106
D S D VTAS D+ A+L++ + E+++EY
Sbjct: 246 DCAFSEDSQYLVTASSDNLARLWNVEAGEVVREY 279
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 289 INSLAFHPDGKSYASGGEDGYVRV 360
+ ++ FH DGK +GGED R+
Sbjct: 85 VTAVGFHEDGKWMFTGGEDSSARI 108
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTN 82
+ + DGT VT SKDHT +++D +
Sbjct: 182 LDVCADGTKIVTGSKDHTVRVWDVS 206
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 295 SLAFHPDGKSYASGGEDGYVRVHNFD 372
++AFHP S+A G DG VRV + +
Sbjct: 15 NIAFHPTNNSFACGFTDGTVRVFDIE 40
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 167 GGGQDAMEVTTTSTRQGKFDARFFHLVFEGS 259
GGG D + V T Q RFF VFEG+
Sbjct: 1453 GGGDDRLFVVTPEAGQIDIPLRFFSAVFEGT 1483
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 301 AFHPDGKSYASGGEDGYVRVHNF 369
AF PDG+ +G DG++ V NF
Sbjct: 221 AFSPDGQYLVTGSVDGFIEVWNF 243
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+ G + H + L + PDGK ASGG D V +
Sbjct: 463 KIGTLLNHSQEVCGLKWSPDGKLLASGGNDNVVNI 497
>SB_42181| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00013)
Length = 201
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 158 VVLGGGQDAMEVTTTSTRQG 217
VVLGGG AM+ TS RQG
Sbjct: 20 VVLGGGDTAMDCVRTSVRQG 39
>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 17 SRDGTMFVTASKDHTAKLFDTNSLELLK 100
+RDG++F T SKD +L D S +++K
Sbjct: 181 NRDGSLFTTTSKDKKLRLVDPRSGKIVK 208
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
++G I +A PD K +GG DG +RV +++
Sbjct: 702 IDGRSRTILGIAVTPDTKKIITGGADGSIRVWDYE 736
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
+E + GH I ++A PDG S G+D V+V + +
Sbjct: 907 KEVRSLVGHTSDIFAVAVTPDGSKVISSGDDTQVKVWSLE 946
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
++GH G + +A DG+ S +D +R+ N +
Sbjct: 828 LDGHDGHVRGIAITSDGRRLVSASQDRTLRIWNLE 862
>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
Length = 291
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
++G + +A PD KS A+GG V V FD +
Sbjct: 61 LKGSKSEVTGMAISPDNKSLAAGGHRSAVSVLKFDHT 97
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYT 393
G +N + PDG ASGG+DG + + + YT
Sbjct: 202 GYLNCVTVSPDGSLCASGGKDGQAMLWDLNDGKHLYT 238
>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
Length = 271
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 418 LTTPYCNRKCSQSKIDQSYEHAHNHLHLRKHRTFHLDGKP 299
+ P CN + +++ + Q E N LR+ R FH P
Sbjct: 225 IIVPPCNCQVAKTALQQKTEEGRNANRLRRFRDFHYTALP 264
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKE 103
D+ S DG + + S+D T +++D + E LK+
Sbjct: 1463 DVAFSSDGALLTSGSRDRTVRVWDCAAAEKLKK 1495
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
R+ ++GH G I LA DGK SG +D ++V
Sbjct: 411 RDCVSLKGHGGLIKCLAAMHDGKRIVSGAKDNNIKV 446
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQ 375
+++GH + ++ DG+ SG DG VR+ + Q
Sbjct: 206 KLKGHMDNVKAVVIDSDGQQCLSGSSDGTVRLWSLGQ 242
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 289 INSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYT 393
I+S+ F P G++ A G E G + V N ++ YT
Sbjct: 845 IHSVTFSPRGEAIAVGCESGTISVFNLQEARVMYT 879
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSY-ASGGEDGYVRV 360
H GP+ +L +HP+ +++ A+GG D V+V
Sbjct: 420 HNGPVFTLDWHPEDRNWIATGGRDKCVKV 448
>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +1
Query: 298 LAFHPDGKSYASGGEDGYVR 357
L FH GK Y SGG DG VR
Sbjct: 560 LDFHFSGKIYVSGGFDGTVR 579
>SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93)
Length = 524
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 403 CNRKCSQSKIDQSYEHAHNHLHLRKHRTFHLDGKPNC 293
CNR S SK + + N + T HLDG NC
Sbjct: 267 CNRYESLSKASEECKEWVNSEQFKLWETSHLDGSANC 303
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 289 INSLAFHPDGKSYASGGEDGYVRVH 363
I+ + F PDGK A G D YV ++
Sbjct: 231 ISDIKFSPDGKFLAVGSHDNYVDIY 255
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRV 360
H P+ +++F PDG+ ASG D V +
Sbjct: 332 HHEPVYTISFSPDGRYLASGSFDKRVHI 359
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
R+F ++GH + L F +GK AS +D VR+
Sbjct: 92 RQFAALKGHTSEVLDLDFSLNGKLLASTSQDRTVRL 127
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRV 360
GH + LA DG SG EDG V+V
Sbjct: 1057 GHSKGVYGLAVTADGSCVVSGSEDGSVKV 1085
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
R+ GH + L + PD + ASGG D + V N S
Sbjct: 141 RLVGHRQEVCGLKWSPDHQHLASGGNDNKLLVWNLSGS 178
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 292 NSLAFHPDGKSYASGGEDGYVRV 360
N++ DGK++ SG +DG +RV
Sbjct: 222 NTVDIQKDGKAFVSGWDDGKIRV 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,832,912
Number of Sequences: 59808
Number of extensions: 332352
Number of successful extensions: 1048
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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