Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1199
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.8  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   5.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -3

Query: 363 MNTHITIFTSGSIGLSIWM---ESQTVDRTKVTFHSAKLPSNTKWKK 232
           +N  I  F S    L+ W          RT +   + KLP+   WKK
Sbjct: 354 INPFIYAFYSADFRLAFWRLTCRKCFKSRTNLDPSNRKLPAPANWKK 400


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 282 KVTFHSAKLPSNTKW 238
           KVTFH   +P++  W
Sbjct: 99  KVTFHEMSIPNHYLW 113


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 402 VIESVVKVRLIKVMNTHITIFTSGSIGLS 316
           VI   +K  L +V+N H    TS  IG++
Sbjct: 48  VIGKKIKELLPEVLNNHCNRCTSRQIGIA 76


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 366 VMNTHITIFTSGSIGLSIWMESQTVDRTKV 277
           V    + +F   +  LS W E Q++DR  +
Sbjct: 310 VSKNGVLLFGLANNTLSCWNEHQSLDRQNI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,547
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)