Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1199
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 93 1e-19
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 93 2e-19
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 93 2e-19
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 54 7e-08
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 46 1e-05
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 44 6e-05
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 44 6e-05
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 44 7e-05
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 43 1e-04
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 42 4e-04
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 40 0.001
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 37 0.011
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 37 0.011
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 36 0.020
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 36 0.026
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 36 0.026
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 36 0.026
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 35 0.034
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 35 0.034
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 35 0.034
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 35 0.034
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 35 0.034
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 35 0.034
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 35 0.034
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 35 0.045
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 35 0.045
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 35 0.045
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 35 0.045
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 35 0.045
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 34 0.060
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea... 34 0.060
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 34 0.060
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 34 0.079
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 34 0.079
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 33 0.10
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 33 0.10
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 33 0.10
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 33 0.10
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 33 0.14
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 33 0.14
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 33 0.14
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 33 0.18
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 32 0.24
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 32 0.24
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 32 0.32
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 32 0.32
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 32 0.32
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 32 0.32
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 32 0.32
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.42
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.42
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 31 0.42
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 31 0.42
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 31 0.56
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 31 0.73
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.73
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 31 0.73
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 31 0.73
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 30 0.97
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 30 1.3
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 30 1.3
At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,... 30 1.3
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 29 1.7
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 29 1.7
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 29 1.7
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 29 1.7
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 29 1.7
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 29 1.7
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP... 29 1.7
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 29 2.2
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 29 2.2
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 2.2
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 29 2.2
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 29 3.0
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 29 3.0
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 29 3.0
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 28 3.9
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 28 3.9
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 28 3.9
At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ... 28 3.9
At1g48730.1 68414.m05453 expressed protein 28 3.9
At1g14570.2 68414.m01733 UBX domain-containing protein contains ... 28 3.9
At1g14570.1 68414.m01732 UBX domain-containing protein contains ... 28 3.9
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 28 5.2
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 28 5.2
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 28 5.2
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a... 27 6.8
At3g01670.1 68416.m00098 expressed protein 27 6.8
At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase ... 27 6.8
At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase ... 27 6.8
At1g65030.1 68414.m07371 transducin family protein / WD-40 repea... 27 6.8
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 27 9.0
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 27 9.0
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 27 9.0
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 27 9.0
At2g05920.1 68415.m00642 subtilase family protein contains simil... 27 9.0
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa... 27 9.0
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 27 9.0
At1g20160.1 68414.m02521 subtilase family protein similar to sub... 27 9.0
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 93.1 bits (221), Expect = 1e-19
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T + + D + F+T S D TAKL+D +L L+K Y T PVN+ A+SP+L+HVVLGGGQD
Sbjct: 224 TSLCKAADDSHFLTGSHDKTAKLWDMRTLTLIKTYTTVVPVNAVAMSPLLNHVVLGGGQD 283
Query: 182 AMEVTTTSTRQGKFDARFFHLVFE 253
A VTTT R GKF+A+F+ + +
Sbjct: 284 ASAVTTTDHRAGKFEAKFYDTILQ 307
Score = 81.4 bits (192), Expect = 4e-16
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 205 NQTG*IRCSFLPLSI*REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 384
++ G F + E G V+GHFGPIN+LAF PDGKS++SGGEDGYVR+H+FD +YF
Sbjct: 292 HRAGKFEAKFYDTILQEEIGGVKGHFGPINALAFSPDGKSFSSGGEDGYVRLHHFDSNYF 351
Query: 385 D 387
+
Sbjct: 352 N 352
Score = 35.1 bits (77), Expect = 0.034
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 14 LSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVL 166
+SRD + +T S D TAKL+D S + L +K P S S + DH+ +
Sbjct: 87 ISRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFS-VGDHLAV 136
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T + + D + F+T S D TAKL+D +L LLK Y T PVN+ +LSP+L+HVVLGGGQD
Sbjct: 197 TSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQD 256
Query: 182 AMEVTTTSTRQGKFDARFFHLVFE 253
A VTTT R GKF+A+F+ + +
Sbjct: 257 ASAVTTTDHRAGKFEAKFYDKILQ 280
Score = 81.4 bits (192), Expect = 4e-16
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 205 NQTG*IRCSFLPLSI*REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 384
++ G F + E G V+GHFGPIN+LAF+PDGKS++SGGEDGYVR+H+FD YF
Sbjct: 265 HRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYF 324
Query: 385 D 387
+
Sbjct: 325 N 325
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 14 LSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNS 130
+SRD + +T S D TAKL+D S + L +K P S
Sbjct: 60 VSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRS 98
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T + + D + F+T S D TAKL+D +L LLK Y T PVN+ +LSP+L+HVVLGGGQD
Sbjct: 197 TSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQD 256
Query: 182 AMEVTTTSTRQGKFDARFFHLVFE 253
A VTTT R GKF+A+F+ + +
Sbjct: 257 ASAVTTTDHRAGKFEAKFYDKILQ 280
Score = 81.4 bits (192), Expect = 4e-16
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 205 NQTG*IRCSFLPLSI*REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 384
++ G F + E G V+GHFGPIN+LAF+PDGKS++SGGEDGYVR+H+FD YF
Sbjct: 265 HRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYF 324
Query: 385 D 387
+
Sbjct: 325 N 325
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 14 LSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNS 130
+SRD + +T S D TAKL+D S + L +K P S
Sbjct: 60 VSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRS 98
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 54.0 bits (124), Expect = 7e-08
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV 160
T + + D + F+T S D TAKL+D +L LLK Y T PVN+ +LSP+L+HV
Sbjct: 197 TSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHV 249
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 14 LSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNS 130
+SRD + +T S D TAKL+D S + L +K P S
Sbjct: 60 VSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRS 98
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+E G +GH GP++ + F P G+SYASG EDG +R+
Sbjct: 261 KEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRI 296
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T ++S+DG ++T + T K +D N L+K Y + SA+L P + + GG+D
Sbjct: 191 TSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSGNKFVAGGED 249
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
E G +GH GP++ + F P G SYASG EDG +R+
Sbjct: 262 EIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRI 296
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T ++S+DG ++T + T K +D N L+K Y + SA+L P + GG+D
Sbjct: 191 TSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSGEKFVAGGED 249
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 259 FGRVEGHFGPIN--SLAFHP-DGKSYASGGEDGYVRVHNF 369
FG V+ + P N S + P G+ + +GGED +VRV +F
Sbjct: 218 FGLVKSYDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDF 257
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
E G +GH GP++ + F P G SYASG EDG +R+
Sbjct: 262 EIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRI 296
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T ++S+DG ++T + T K +D N L+K Y + SA+L P + GG+D
Sbjct: 191 TSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSGEKFVAGGED 249
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 259 FGRVEGHFGPIN--SLAFHP-DGKSYASGGEDGYVRVHNF 369
FG V+ + P N S + P G+ + +GGED +VRV +F
Sbjct: 218 FGLVKSYDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDF 257
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 23 DGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPI-LDHVVLGGGQDAMEVTT 199
D MF+T S DH K++DTN+ +++ ++K V A+S + + H ++ G D ++V
Sbjct: 115 DTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRL 174
Query: 200 TSTRQGKF 223
G F
Sbjct: 175 CDIASGAF 182
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
E G +GH GP++ + + P G+SY SG EDG VR+
Sbjct: 257 EIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRI 291
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQD 181
T ++S+DG ++T + + K +D + LLK Y V SA+L P + + GG+D
Sbjct: 186 TSAEVSQDGR-YITTADGSSVKFWDAKNFGLLKSYDMPCNVESASLEPKHGNTFIAGGED 244
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ GH G I +L F PDGK A+GGEDG V++
Sbjct: 193 KINGHKGKIWTLKFSPDGKYLATGGEDGVVKI 224
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 23 DGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPI-LDHVVLGGGQDAMEVTT 199
D +F+T S DH K++DTN+ + + ++K V A+S + + H ++ G + ++V
Sbjct: 115 DTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRL 174
Query: 200 TSTRQGKF 223
G F
Sbjct: 175 CDIASGAF 182
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ H G I ++ F PDG+ AS GEDG +RV
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRV 277
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ H G I ++ F PDG+ AS GEDG +RV
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRV 277
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 35.9 bits (79), Expect = 0.020
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRVHNF 369
G INS+AF DG A+ G DGY+R+ +F
Sbjct: 304 GSINSIAFSNDGAHLATVGRDGYLRIFDF 332
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 35.5 bits (78), Expect = 0.026
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRV 360
P+NS+AFHP ++A+GG DG+V +
Sbjct: 243 PVNSIAFHPIYGTFATGGCDGFVNI 267
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 35.5 bits (78), Expect = 0.026
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRVHNF 369
G INS+AF DG A+ G DGY+R+ +F
Sbjct: 304 GAINSIAFSNDGAYLATVGRDGYLRIFDF 332
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
V+ ++G + A+ DGK +GGED V+V + +
Sbjct: 341 VKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWSME 375
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 35.5 bits (78), Expect = 0.026
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRV 360
P+N++AFHP ++ASGG DG+V +
Sbjct: 242 PVNAIAFHPIYGTFASGGCDGFVNI 266
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ H G I ++ F DGK AS GEDG VRV
Sbjct: 217 IKAHDGAILAMKFSNDGKFLASSGEDGIVRV 247
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 35.1 bits (77), Expect = 0.034
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
GH G +N++ F PDG + +G +DG R+++
Sbjct: 246 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYD 276
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.1 bits (77), Expect = 0.034
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
GH G +N++ F PDG + +G +DG R+++
Sbjct: 184 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYD 214
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.1 bits (77), Expect = 0.034
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
GH G +N++ F PDG + +G +DG R+++
Sbjct: 246 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYD 276
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 35.1 bits (77), Expect = 0.034
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYV 354
GH G +N++A PDG ASGG+DG +
Sbjct: 191 GHSGYLNTVAVSPDGSLCASGGKDGVI 217
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 35.1 bits (77), Expect = 0.034
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYV 354
GH G +N++A PDG ASGG+DG +
Sbjct: 191 GHSGYLNTVAVSPDGSLCASGGKDGVI 217
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYN 405
GH G ++++A PDG ASGG+DG V + + + Y+ + N
Sbjct: 192 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 235
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 34.7 bits (76), Expect = 0.045
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH +N L F PDG+ SGGED V+V
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKV 169
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 34.7 bits (76), Expect = 0.045
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH +N L F PDG+ SGGED V+V
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKV 169
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 34.7 bits (76), Expect = 0.045
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH +N L F PDG+ SGGED V+V
Sbjct: 233 KGHTRGVNVLRFTPDGRWIVSGGEDNVVKV 262
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 34.7 bits (76), Expect = 0.045
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH P+ S+ F P+G ASGGED R+
Sbjct: 420 QGHIKPVFSVNFSPNGYHLASGGEDNQCRI 449
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 34.7 bits (76), Expect = 0.045
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
+EGH +++++FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHP-DGKSYASGGEDGYVRVHN 366
++EGH P+ SL F P D + SG +DG+V +H+
Sbjct: 195 QLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHD 229
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
GH + +LA HP G AS D +VRV + D
Sbjct: 58 GHSLGVAALAAHPSGIIAASSSIDSFVRVFDVD 90
>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
family protein contains 1 WD-40 repeat (PF00400);
similar to anaphase-promoting complex subunit 4
GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
Length = 510
Score = 34.3 bits (75), Expect = 0.060
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRVHNFD 372
P+ SL + PDGK+ A G EDG + +H+ +
Sbjct: 66 PVTSLCWRPDGKAIAVGLEDGTISLHDVE 94
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
+EGH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.9 bits (74), Expect = 0.079
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFD 399
H G I ++ F PDGK AS GED VRV + + T++
Sbjct: 217 HDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYE 257
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.9 bits (74), Expect = 0.079
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFD 399
H G I ++ F PDGK AS GED VRV + + T++
Sbjct: 217 HDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYE 257
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLEL---LKEYKTERPVN--SAALSPILDHVVL 166
T + LSR+G +T+ +D+ +FDT +LE+ L+ N + +SP D+V
Sbjct: 403 TSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAA 462
Query: 167 GGGQDAMEVTTTS 205
G ++ V + S
Sbjct: 463 GSADGSVHVWSLS 475
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
+ ++GH + L F DGKS A+ DG +RV D +
Sbjct: 78 DLNTLKGHGDAVTGLCFSSDGKSLATACADGVIRVFKLDDA 118
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSY 381
+++GH + L F P+ + + +DG +RV N + Y
Sbjct: 284 QLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNINVRY 322
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 33.5 bits (73), Expect = 0.10
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+++ H GP++S+AFHP+G A+ G++ +++
Sbjct: 276 QMQCHPGPVSSVAFHPNGHLMATSGKERKIKI 307
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERP-VNSAALSPILDHVVLGGGQ 178
T + SRDG+ ++ S D TA++ S +LLKE++ VN A + ++
Sbjct: 309 TSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSD 368
Query: 179 DAMEVTTTST 208
++V + T
Sbjct: 369 CTVKVWDSKT 378
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Frame = +2
Query: 23 DGTMFVTASKDHTAKLFDTNSLELLKEYK-------TERPVNSAALSP-ILDHVVLGGGQ 178
DG+ +TAS D T K++D+ + + L+ +K T+ VNS L P +H+V+
Sbjct: 358 DGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIHLFPKNTEHIVVCNKT 417
Query: 179 DAMEVTT 199
++ + T
Sbjct: 418 SSIYIMT 424
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
++GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRVHNFD 372
P+ S F P + +G +D Y+RV+N++
Sbjct: 59 PVRSAKFIPRKQWVVAGADDMYIRVYNYN 87
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
++GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRVHNFD 372
P+ S F P + +G +D Y+RV+N++
Sbjct: 59 PVRSAKFIPRKQWVVAGADDMYIRVYNYN 87
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
++GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 286 PINSLAFHPDGKSYASGGEDGYVRVHNFD 372
P+ S F P + +G +D Y+RV+N++
Sbjct: 59 PVRSAKFIPRKQWVVAGADDMYIRVYNYN 87
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 17 SRDGTMFVTASKDHTAKLFDTNSLELLKEYKTE-RPVNSAALSPILDHVVLGGGQD 181
+++G +TASKD KL+D +++ L+ ++ + V S A P + + G D
Sbjct: 319 NQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSD 374
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSY-ASGGEDGYV 354
+E GH + SLA+HP + Y SG DG +
Sbjct: 343 KELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSI 377
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKT--ERPVNSAALS 142
+ LSRDGT+ + S D T K++ T + L+ + + +N+ ALS
Sbjct: 171 LALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALS 217
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
GH ++ LAF DG+ ASGG DG V++ FD S
Sbjct: 111 GHKDSVSCLAFSYDGQLLASGGLDGVVQI--FDAS 143
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.9 bits (69), Expect = 0.32
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYV 354
GH + SLA PDG+ ASG EDG +
Sbjct: 539 GHRSMVLSLAMSPDGRYMASGDEDGTI 565
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
R + + GH GP+ S F P G S D +R+
Sbjct: 409 RSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRL 444
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE*LICNTLVFHKII 450
+GH GP+ +A H G A+ G D V V + D + + F ++ + ++++FH
Sbjct: 99 KGHEGPVMGMACHASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKG--VVSSILFHPDS 156
Query: 451 RK*SLI 468
K LI
Sbjct: 157 NKNILI 162
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNF 369
R + H GP+ + FH + SGG+D ++V N+
Sbjct: 46 RFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNF 369
R + H GP+ + FH + SGG+D ++V N+
Sbjct: 46 RFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 378
+EGH +N AFHP SG +D V++ +++
Sbjct: 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILD--HVVLGGGQ 178
D+ S DG+ F+TA D K +DT + +++ + T + L+P D +++L G
Sbjct: 331 DICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMS 390
Query: 179 D 181
D
Sbjct: 391 D 391
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYN 405
GH P+ SLAF P+G+ ASG D + + + + T+ N
Sbjct: 539 GHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEGKIVKTYTGN 582
Score = 30.3 bits (65), Expect = 0.97
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 384
GH G +N + + P G AS +D ++ N QS F
Sbjct: 446 GHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTF 482
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH + S+ F P+G ASGGED R+
Sbjct: 169 QGHIKQVLSVDFSPNGYHLASGGEDNQCRI 198
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
+GH+ +N + + PD + A+G +D V+V N
Sbjct: 346 QGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 377
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
H + ++AF PDGK AS DG + + + YT + R+
Sbjct: 518 HNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRD 562
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
+GH+ +N + + PD + A+G +D V+V N
Sbjct: 386 QGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 417
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 411
H + ++AF PDGK AS DG + + + YT + R+
Sbjct: 558 HNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRD 602
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYT 393
++GH GP+ L FHP+G+ AS G V +T
Sbjct: 142 LKGHKGPVTGLDFHPNGELLASIDTTGTVLCWELQNGVVSFT 183
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 2 TDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILD 154
TD+ S DG +++S D + +++D + + + P+ + +LSP +D
Sbjct: 561 TDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVPITALSLSPNMD 611
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYN 405
+GH I+++ F PDG+ SGG D V+V + + F ++
Sbjct: 139 KGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFH 183
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 38 VTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQDAMEVTTTSTRQG 217
+TA+ D ++FD S + E+ + VN+ ++SP D +L D+ E + + G
Sbjct: 223 ITANNDCKIRVFDAQSFTRVSEFALDWSVNNTSVSP--DGKLLAVVGDSTECLISDSHSG 280
Query: 218 K 220
K
Sbjct: 281 K 281
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH I+++ F PDG+ SGG D V+V
Sbjct: 88 KGHTRGISTIEFSPDGRWVVSGGLDNVVKV 117
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +1
Query: 289 INSLAFHPDGKSYASGGEDGYVRVHNFD 372
+ ++AFHPDG++ G +DG ++V++++
Sbjct: 178 VRAIAFHPDGQTLFCGLDDG-LKVYSWE 204
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRV 360
GH +++ FHP G+ ASG D +RV
Sbjct: 47 GHRSNCSAVEFHPFGEFLASGSSDTNLRV 75
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
H G I + F DGK AS GED VRV N
Sbjct: 256 HDGSIVVMKFSHDGKYLASAGEDCVVRVWN 285
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 256 EFGRVEGHF--GPINSLAFHPDGKSYASGGEDGYVRVHNF 369
++ R EGH+ G F PDG++ ASG DG V ++++
Sbjct: 376 KYKRFEGHWVAGFPIKCNFSPDGETLASGSSDGSVYMYDY 415
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 5 DMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGG 175
D++ S+ G ++ D T++LFD + +K + V P +V L GG
Sbjct: 210 DVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFKEDEVVGVVKFHPDNCNVFLSGG 266
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+ GH + ++F PDGK ASG D VR+
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRL 135
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 265 RVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 366
R+ GH +N + F PDGK AS D VR+ N
Sbjct: 355 RLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWN 388
>At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,
putative 99.8% identical to St12p protein (GI:166878)
{Arabidopsis thaliana}
Length = 393
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 295 SLAFHPDGKSYASGGEDGYVRV 360
+LAF+P+G A+G EDG +RV
Sbjct: 158 ALAFNPEGSVLAAGAEDGTLRV 179
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 283 GPINSLAFHPDGKSYASGGEDGYVRV 360
G + SLAF DGK S G DG V V
Sbjct: 375 GSVRSLAFSEDGKHLLSSGGDGQVYV 400
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 274 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDY 390
GH+ + L F D SG +DG +RV + + + D+
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDF 156
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ H G I S+ F DGK AS GED + +
Sbjct: 409 IQAHNGSIWSIKFSLDGKYLASAGEDCIIHI 439
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 35 FVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 145
F ++ D + FD +L+K ++ PVN A+LSP
Sbjct: 251 FTASNNDCGVRDFDMERYQLVKHFRFPWPVNHASLSP 287
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+ GH + A+HPDG ++++G +D RV
Sbjct: 315 LSGHLDFSFASAWHPDGVTFSTGNQDKTCRV 345
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 LSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERP-VNSAALSPILDHVVLGGGQDAME 190
L G ++ S D +L+D L Y V + A +P HV GG +
Sbjct: 263 LDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLY 322
Query: 191 VTTTSTRQ 214
+T +TR+
Sbjct: 323 LTDLATRE 330
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 LSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERP-VNSAALSPILDHVVLGGGQDAME 190
L G ++ S D +L+D L Y V + A +P HV GG +
Sbjct: 263 LDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLY 322
Query: 191 VTTTSTRQ 214
+T +TR+
Sbjct: 323 LTDLATRE 330
>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
(VPS41) 99.8% identical to Vacuolar assembly protein
VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
similar to vacuolar assembly protein vps41 GI:1835787
from [Lycopersicon esculentum]
Length = 980
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNR 408
H P+N + F +G+ S +DG V +++ FDY+R
Sbjct: 97 HTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDEKMKFDYHR 140
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 262 GRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
G ++GH + A+HP+G ++A+G +D R+
Sbjct: 313 GTLKGHLDYSFASAWHPNGVTFATGNQDKTCRI 345
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 5 DMQLSRDGTM-FVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV-VLGGGQ 178
D+ + G + F+ ++ D + FD +L++ ++ PVN ++LSP V V+G
Sbjct: 240 DIYRNSSGALHFMASNNDCGVRDFDMERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDP 299
Query: 179 DAMEVTTTS 205
D + V T++
Sbjct: 300 DGLLVDTSN 308
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 262 GRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
G ++GH + A+HP+G ++A+G +D R+
Sbjct: 307 GTLKGHLDYSFASAWHPNGVTFATGNQDKTCRI 339
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 5 DMQLSRDGTM-FVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV-VLGGGQ 178
D+ + G + F+ ++ D + FD +L++ ++ PVN ++LSP V V+G
Sbjct: 234 DIYRNSSGALHFMASNNDCGVRDFDMERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDP 293
Query: 179 DAMEVTTTS 205
D + V T++
Sbjct: 294 DGLLVDTSN 302
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGED 345
++GH PINS+ + P G AS ED
Sbjct: 814 LQGHANPINSVCWDPSGDFLASVSED 839
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++GH G + S+AF P + + +G D +++
Sbjct: 172 IQGHLGWVRSVAFDPSNEWFCTGSADRTIKI 202
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYK--TERPVNSAALSPILDHVVLGGGQD 181
+ +S DG + D T +L D + ELL+ YK + + D V+GG +D
Sbjct: 190 ISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSDAHVIGGSED 249
Query: 182 AM 187
+
Sbjct: 250 GL 251
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ H G I S+ F DG+ AS GED +++
Sbjct: 359 IQAHKGSIWSIKFSLDGRYLASAGEDCVIQI 389
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVR---VHNFDQS 378
+EGH S A+HP+G+ A+G +D R V N QS
Sbjct: 315 LEGHLDYSFSSAWHPNGQILATGNQDTTCRLWDVRNLSQS 354
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVH 363
R + HFG +N + + + + ASG +D +++H
Sbjct: 50 RLLATLRDHFGSVNCVRWAKNSRYVASGSDDQVIQIH 86
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++GH G + S+AF P + + +G D +++
Sbjct: 166 LQGHLGWVRSVAFDPSNEWFCTGSADRTIKI 196
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+GH G + S++ G+ ASG DG VR+
Sbjct: 420 KGHTGAVTSISTDSSGEWIASGSTDGSVRM 449
>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
identical to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana], missing 200 aa at
N-terminus
Length = 772
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 255 GVWPSGRSLWSYQQFGFPSRWKVLC 329
GVWP +S PSRWK +C
Sbjct: 155 GVWPESKSFRDEGLGPIPSRWKGIC 179
>At1g48730.1 68414.m05453 expressed protein
Length = 191
Score = 28.3 bits (60), Expect = 3.9
Identities = 26/83 (31%), Positives = 35/83 (42%)
Frame = +2
Query: 20 RDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQDAMEVTT 199
R GTM +T S +L SLE Y TE + +SP L VV ++ V
Sbjct: 66 RKGTMLLTTSDGDYGELM--TSLEK-SAYTTELGPAGSMVSPTLKIVVWAETKEEACVDW 122
Query: 200 TSTRQGKFDARFFHLVFEGSLAE 268
+TR G HL+ S+ E
Sbjct: 123 LATRHGIITGDLLHLLNGVSIPE 145
>At1g14570.2 68414.m01733 UBX domain-containing protein contains
Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
interaction motif
Length = 468
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 236 FHLVFEGSLAEWKVTLVLSTVWLSIQMES 322
FHL+F+GS + K T WL + ++S
Sbjct: 179 FHLMFQGSFEQAKTTSSSQDKWLLVNLQS 207
>At1g14570.1 68414.m01732 UBX domain-containing protein contains
Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
interaction motif
Length = 468
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 236 FHLVFEGSLAEWKVTLVLSTVWLSIQMES 322
FHL+F+GS + K T WL + ++S
Sbjct: 179 FHLMFQGSFEQAKTTSSSQDKWLLVNLQS 207
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE*LICNTLVFH 441
H PIN L FHP S +D ++ +F ++ F ++ ++ FH
Sbjct: 83 HAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFH 137
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTNSLELLK 100
++ S G++++TASKD +LFD S + ++
Sbjct: 180 VRYSSTGSIYITASKDGAIRLFDGVSAKCVR 210
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 277 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE*LICNTLVFH 441
H PIN L FHP S +D ++ +F ++ F ++ ++ FH
Sbjct: 175 HAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFH 229
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTNSLELLK 100
++ S G++++TASKD +LFD S + ++
Sbjct: 272 VRYSSTGSIYITASKDGAIRLFDGVSAKCVR 302
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 253 REFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
RE R P+N++ HP+ SG ++G +RV
Sbjct: 116 RECQREFRSVSPVNTVVLHPNQTELISGDQNGNIRV 151
>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
annotation temporarily based on supporting cDNA
gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
splice variant S and SWITCH1 splice variant L (SWI1)
GI:16033413 and GI:16033410
Length = 639
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 256 EFGRVEGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
E ++ G G ++ L H GK A GG+D ++R HN D
Sbjct: 331 EARKLIGDTGLLDHLLKHMAGK-VAPGGQDRFMRKHNAD 368
>At3g01670.1 68416.m00098 expressed protein
Length = 822
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 220 IRCSFLPLSI*REFGRVEGHFGPINSLAFHPDGKSYASGGE-----DGYVRVHNFDQSYF 384
IR S +P S+ + G FGP AFH +G+ S + D ++ H+ D +F
Sbjct: 100 IRHSMVPKSLGPN--SLGGRFGPGKKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIFF 157
Query: 385 DYT 393
D T
Sbjct: 158 DVT 160
>At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase
[NADH], chloroplast, putative / NADH-dependent enoyl-ACP
reductase, putative strong similarity to
enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
from [Brassica napus]
Length = 390
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 158 VVLGGGQDAMEVTTTSTRQGKFDARFFHLVFEGSLAEWKVTLVLSTVW 301
+++G A+ + TS R+GKFD ++ +GSL E K L V+
Sbjct: 123 ILVGTWVPALNIFETSLRRGKFDQS--RVLPDGSLMEIKKVYALDAVF 168
>At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase
[NADH], chloroplast, putative / NADH-dependent enoyl-ACP
reductase, putative strong similarity to
enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
from [Brassica napus]
Length = 390
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 158 VVLGGGQDAMEVTTTSTRQGKFDARFFHLVFEGSLAEWKVTLVLSTVW 301
+++G A+ + TS R+GKFD ++ +GSL E K L V+
Sbjct: 123 ILVGTWVPALNIFETSLRRGKFDQS--RVLPDGSLMEIKKVYALDAVF 168
>At1g65030.1 68414.m07371 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to PAK/PLC-interacting protein 1 (GI:14211689)
[Homo sapiens]
Length = 345
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 VTASKDHTAKLFDTNSLELLKEYKT-ERPVNSAALSP 145
++A+ D + +FDT+ LLK ++ ++ VN A+ P
Sbjct: 104 ISAAADGSVAIFDTDPFVLLKSFRPHKKAVNDLAIHP 140
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 271 EGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 372
+GH ++S+A++ +G ASG D R+ N +
Sbjct: 17 QGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIE 50
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
++ H G I ++ F PD AS GED + V
Sbjct: 407 IQAHQGGIWTMKFSPDSHLLASAGEDCAIHV 437
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 388 SQSKIDQSYEHAHNHLHLRKHRTFH 314
S S+ S++H H+H HL H H
Sbjct: 502 SPSRWQPSHQHHHHHQHLHHHHQNH 526
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 8 MQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTE 115
++ + DG+ F+T S D ++D + E+L E ++
Sbjct: 193 VRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSD 228
>At2g05920.1 68415.m00642 subtilase family protein contains
similarity to cucumisin-like serine protease GI:3176874
from [Arabidopsis thaliana]
Length = 754
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 255 GVWPSGRSLWSYQQFGFPSRWKVLC 329
GVWP RS PS+WK C
Sbjct: 136 GVWPESRSFDDTDMPEIPSKWKGEC 160
>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P98200, {Bos taurus} SP|Q29449, {Homo
sapiens} SP|O43520; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1200
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 175 SRCYGSDNHINQTG*IRCSFLPLSI*REFGRVEG-HFGPINSLAFHP 312
SR Y SDN++ T +FLP S+ +F RV +F LAF P
Sbjct: 56 SRNY-SDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVTGVLAFTP 101
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 268 VEGHFGPINSLAFHPDGKSYASGGEDGYVRV 360
+ GH + A+HPDG ++++G +D RV
Sbjct: 313 LSGHLDFSFASAWHPDGFTFSTGNQDKTCRV 343
>At1g20160.1 68414.m02521 subtilase family protein similar to
subtilisin-type protease precursor GI:14150446 from
[Glycine max]
Length = 769
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 255 GVWPSGRSLWSYQQFGFPSRWKVLC 329
G+WP S PSRWK C
Sbjct: 147 GIWPESESFNDKDMGPIPSRWKGTC 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,880,674
Number of Sequences: 28952
Number of extensions: 234125
Number of successful extensions: 958
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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