Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1198
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.2  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   5.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   9.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   9.0  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   9.0  

>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 134 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNRLSAIRM 274
           ++IFL P    +G+    +D W+ F+    E DW       G N ++ + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAVAIMNV 388


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -1

Query: 486 FERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSH 307
           F + + ++  V+++DE+  L      +   Q    R + EL   + R FS   + H FS 
Sbjct: 242 FSKMRRISIDVDYVDEDLNL----INAYLSQFGKKRSLNELCALLSRRFS---NRHTFSE 294

Query: 306 WHGVFFKYDKFI 271
           W  +F  +  FI
Sbjct: 295 WRALFMHFFPFI 306


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 80  SPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIP 178
           S F V++ VD +VAS   +    AP   DN  P
Sbjct: 113 SAFTVSVPVDVDVASHVNISSPSAPSLSDNLFP 145


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 722 FLHFLWILRMQNSSVYLNLI-FWNNIRLCVIRRNIEFVREPFTL 594
           FL   W+   Q   +  +LI  WN I  CV+   IE VR   T+
Sbjct: 91  FLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRSIATI 134


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 178 RYSVVIVFGSQEDFDNSVTGDIRINLNVNVE 86
           R ++V+V G  + FD  +T  +  ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,778
Number of Sequences: 5004
Number of extensions: 72153
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)