Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1198
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 5.5
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 29 5.5
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 5.5
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 29 5.5
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 29 5.5
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2) 29 5.5
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 29 5.5
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 29 5.5
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_12593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45572| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.08) 28 9.5
SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1) 28 9.5
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 219 SWLRLFKLDWPSMKLVEGKN 238
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 377 SWLRLFKLDWPSIKLVQGKN 396
>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 76 SWLRLFKLDWPSIKLVQGKN 95
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 293 SWLRLFKLDWPSIKLVQGKN 312
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 76 SWLRLFKLDWPSIKLVQGKN 95
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 287 SWLRLFKLDWPSIKLVQGKN 306
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 164 SWLRLFKLDWPSIKLVQGKN 183
>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 15 SWLRLFKLDWPSIKLVQGKN 34
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 399 SWLRLFKLDWPSIKLVQGKN 418
>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
Length = 419
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 349 SWLRLFKLDWPSIKLVQGKN 368
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 467 SWLRLFKLDWPSIKLVQGKN 486
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKN 1136
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 143 SWLRLFKLDWPSMKLVEGKN 162
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 194 NWMKFFELDWFTTKLTAGQN 253
+W++ F+LDW + KL G+N
Sbjct: 176 SWLRLFKLDWPSIKLVQGKN 195
>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 576 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 665
D+F+++ GE + IP YDT ++ P +
Sbjct: 195 DVFVFYPGEGYRNMHVIPGYDTAADEYPSH 224
>SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 526 IAPLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHS 645
I PL+ L C+S + T ++GSL++ + ++TH+
Sbjct: 45 ILPLVPRPKELLECVSNMRLLTWLLHGSLSHMVHSKITHA 84
>SB_12593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 576 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 665
D+F+++ GE + IP YDT ++ P +
Sbjct: 259 DVFVFYPGEGYRNVHVIPGYDTAADEYPSH 288
>SB_45572| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.08)
Length = 813
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 513 QELIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSR 397
QEL++KN FER + L VE + EN+ ES S R
Sbjct: 731 QELLLKNLEFERDE-LRRQVEELCENRSRSQESRTSPDR 768
>SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1)
Length = 298
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 576 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 665
D+F+++ GE + IP YDT ++ P +
Sbjct: 253 DVFVFYPGEGYRNVHVIPGYDTAADEYPSH 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,493,025
Number of Sequences: 59808
Number of extensions: 511646
Number of successful extensions: 1488
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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