Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1198
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.64 
At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal...    29   3.4  
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal...    29   3.4  
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal...    29   3.4  
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    29   4.5  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   6.0  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 529 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 672
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 382

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 206 FFELDWFTTKLTAGQNRLSA 265
           FFE+DWFT  L   +N L+A
Sbjct: 247 FFEVDWFTEYLNKAENSLNA 266


>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 536

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 206 FFELDWFTTKLTAGQNRLSA 265
           FFE+DWFT  L   +N L+A
Sbjct: 247 FFEVDWFTEYLNKAENSLNA 266


>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 401

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 206 FFELDWFTTKLTAGQNRLSA 265
           FFE+DWFT  L   +N L+A
Sbjct: 112 FFEVDWFTEYLNKAENSLNA 131


>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 499 DNKLLASLWIAPLLMHYSRFLTCISRIFSFTTRVN--GSLTNSIFLRMTHSLM 651
           +N L ++LW+A  L+      T   R+F FT   +  GS+  S+   MT + +
Sbjct: 145 ENSLYSALWVAQALLRKGSLKTADKRMFLFTNEDDPFGSMRISVKEDMTRTTL 197


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 163 IVFGSQEDFDNSVTGDIRINLNV 95
           I+F SQ+DFDN +T  I  + ++
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,045
Number of Sequences: 28952
Number of extensions: 362484
Number of successful extensions: 960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)