Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1197
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    28   0.75 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   4.0  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    26   4.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   5.3  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.0  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 306 EPNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSKPISRSLLMGEQSNASRI 461
           +P+ RN GSS  E   YR   P      P    S+PI+R  LM + + +  I
Sbjct: 442 QPSQRNGGSSTYESQDYREAAPLS----PTEEESRPITRDELMKKLARSEDI 489


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 160 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFILTRASRLRRSG 38
           DF+SR         + + RRR P  SRR +    +  RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 515 SDVLFDPSMSALPIIARQNSRSV 447
           S +L D  +SALPI+A + S  +
Sbjct: 68  SSILIDRDLSALPIVAAKGSNEI 90


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 137 FKTRDATSKPIWIAEIDAIGFYLN 66
           ++T++  +  IW+  I  +G+Y N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 309 PNVRNCGSSRTEQYYYRNDKPSVG 380
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,291
Number of Sequences: 5004
Number of extensions: 41842
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)