Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1197
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   6.3  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   8.3  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    27   8.3  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +3

Query: 6    YSVPRHRTELYPDLRSRDARVKIKTDSID--LRDP-NGLRRRVSRFECETRLVKSHCLEP 176
            + +P    ++Y DL+    RVK   + ++  L +  N  R++      + R +       
Sbjct: 1139 HHLPMDVYQVYQDLK----RVKFDRERLNGSLEEQLNKARKQKKNLAAKKRQMVKTQTAA 1194

Query: 177  PDSRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
            PD  G  + ++  D   LA+  E  ++    +  H R L + HE N+
Sbjct: 1195 PDYDGRNIDLNESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +3

Query: 6    YSVPRHRTELYPDLRSRDARVKIKTDSID--LRDP-NGLRRRVSRFECETRLVKSHCLEP 176
            + +P    ++Y DL+    RVK   + ++  L +  N  R++      + R +       
Sbjct: 1139 HHLPMDVYQVYQDLK----RVKFDRERLNGSLEEQLNKARKQKKNLAAKKRQMVKTQTAA 1194

Query: 177  PDSRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
            PD  G  + ++  D   LA+  E  ++    +  H R L + HE N+
Sbjct: 1195 PDYDGRNIDLNESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240


>Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 162 VTLLVAFRIQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQFD 22
           +T L+  +I NA    E++ D  +     L  H+++ SEG ++TQ +
Sbjct: 11  LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56


>Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 162 VTLLVAFRIQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQFD 22
           +T L+  +I NA    E++ D  +     L  H+++ SEG ++TQ +
Sbjct: 11  LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = -2

Query: 271 TIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETR 119
           +++G I + +    ++    K ++  EP+E+   +  D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356


>AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 162 VTLLVAFRIQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQFD 22
           +T L+  +I NA    E++ D  +     L  H+++ SEG ++TQ +
Sbjct: 11  LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56


>AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 162 VTLLVAFRIQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQFD 22
           +T L+  +I NA    E++ D  +     L  H+++ SEG ++TQ +
Sbjct: 11  LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56


>AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 162 VTLLVAFRIQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQFD 22
           +T L+  +I NA    E++ D  +     L  H+++ SEG ++TQ +
Sbjct: 11  LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56


>AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 162 VTLLVAFRIQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQFD 22
           +T L+  +I NA    E++ D  +     L  H+++ SEG ++TQ +
Sbjct: 11  LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 298 RPSGRWCEATIRGIILNASKAEAS 227
           RPSG WC     G+ L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 165  NVTLLVAFR-IQNARRDVEAHLDRGDRCYRFLS*HVHHGSEGPDITQF 25
            N   L+AF  +  A+ D EAHL+  +RC R +    H G    +I QF
Sbjct: 1134 NEKFLLAFALVLRAKYDHEAHLNLVNRCMRNVC-KTHFGETVDEIFQF 1180


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 337 REEPQFRTFGSCTRPSGRWCEATIRGIILNASKAEASLA 221
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -2

Query: 298 RPSGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 134
           RPSG WC     G     + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 54  RDARVKIKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS-RGSTVSISLPDSARL 230
           R  R++I+  ++ ++ P G   R  RFE   ++   H +  P +  G  V +S  ++  L
Sbjct: 665 RQVRIEIENTTLTVKKPRGGILRKIRFETGQKIEVFHSIPNPSAMHGPFVLLSQKNNHHL 724

Query: 231 ASALEAFRIIPRMV 272
              L + R + + +
Sbjct: 725 VIRLSSDRDLSKFL 738


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,147
Number of Sequences: 27780
Number of extensions: 239169
Number of successful extensions: 740
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)