Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1197
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 277 RTTGRSAECMNQMSETAVPLVLSS 348
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 136 SKRE-TRRRSPFGSRRSMLSVFILTRASRLRRSGYNSVRCRGTE 8
           ++RE  R  +PF +  +  S   L RA    RSG  SV+   TE
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE 545


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 324 SFGHLVHALGRAAGGAKLPSAGLS*TPLRPKP 229
           S   LV A+   AGG   PSAG    P+ P P
Sbjct: 393 SMSALVSAVRSPAGGQLPPSAG---APMPPIP 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,718
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)