Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1197
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22260.1 68414.m02782 expressed protein                             29   2.6  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    29   2.6  
At2g17550.1 68415.m02031 expressed protein                             28   4.5  
At4g26190.1 68417.m03770 expressed protein                             27   5.9  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    27   5.9  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   5.9  

>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 327 GSSRTEQYYYRNDKPSVG*N*PVSRRSKPISRSLLMGEQSNASRIL----PRNDRKSRHR 494
           GS R+E    R+D  +V  +  V  +  P+S+ L   +  NA  +L    P++  K  HR
Sbjct: 735 GSKRSEHIRVRSDNDNVQDSPFVKAKETPVSKILKKAQNVNAGSVLSIPNPKHHSKVTHR 794


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = +3

Query: 240 LEAFRIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSKPIS 419
           +  +R   R  +  +R   R   P  R  G  R+   +Y+    S        RR + +S
Sbjct: 273 MRRYRSRSRSYSPRYRARDRSCSPYYR--GRDRSYSPHYQGRDRSYSPESRYYRRHRSVS 330

Query: 420 RSLLMGEQSNASRILPRNDRKSRHRRIKKH 509
            S+  G +S +  I PR  RK    + ++H
Sbjct: 331 GSVSPGGRSMSRSISPRKGRKESRSKSRRH 360


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +3

Query: 48  RSRDARVKIKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 227
           R+ D   ++ T  + + D N LRR+++  E E ++      EP     + V +  PD   
Sbjct: 527 RNVDYLSQVSTPDVTVSDENELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVF 586

Query: 228 LASALEA 248
           +   L A
Sbjct: 587 VRDLLVA 593


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 137  FKTRDATSKPIWIAEIDAIGFYLNTCITAPK 45
            FKT++   KP+++ ++  +  ++ TCI+  K
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 289 GRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCD 158
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 240 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 100
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,818
Number of Sequences: 28952
Number of extensions: 231659
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)