Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.80 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.80 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.80 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 413 TRPSGRWCEVPSAGLC 460
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 413 TRPSGRWCEVPSAGLC 460
           ++ S + CE+PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 413 TRPSGRWCEVPSAGLC 460
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 455 LCLNASKAEASLAESGKDCSLWS 523
           LC +  K  +S   +G  C LWS
Sbjct: 35  LCQSFRKQNSSSCGNGNRCDLWS 57


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 542  EPPDSRGSTVSNPCRIRLGWLRP 474
            +PPD    T      IR+ W+ P
Sbjct: 1102 QPPDKATCTTLTAQTIRVSWVSP 1124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,846
Number of Sequences: 336
Number of extensions: 3586
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)