Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    29   0.50 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.1  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 522 LHSEQSLPDSARLASALEAFRHNPADGTSHHRPLGRVHEPNVRNCGSSRTEQYYYRNDK 346
           +HS++++  SA ++SAL      P  G ++ RPL   HE  V   G+ +   YY  +++
Sbjct: 51  VHSKRTVLTSADISSALRTLNVEPLYGFNNSRPL-EFHEAAV---GAGQNSLYYLDDEE 105


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/100 (25%), Positives = 45/100 (45%)
 Frame = -1

Query: 605 GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSNPCRIRLGWLRP*RRSGIIPRMVLRTTG 426
           G++ R+  +  E  L + H   P  S  +T S  C   + W     +S I   +  R + 
Sbjct: 92  GIKDRIPVYYEEEELPEPHVTSPTKSEFATTST-C---MKWSSKTTKSEI--EVEWRDSY 145

Query: 425 RSAECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGL 306
             A C+ ++ ++  P   S +T  ++SHQ G ++ S   L
Sbjct: 146 LDANCIKEIIDSRRPSFASLLTKKSSSHQ-GSSHSSQPSL 184


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 98   SPYAY*TSGSSQLLPFCSTRGF 33
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,297
Number of Sequences: 5004
Number of extensions: 61000
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)