Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851...    29   2.8  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.6  
12_01_0941 - 9316051-9316056,9316747-9317082                           28   6.4  
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928...    28   6.4  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    28   6.4  
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    28   8.4  

>11_04_0218 +
           14983132-14984658,14984762-14984869,14984964-14985125,
           14985270-14985275
          Length = 600

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 555 VTLFRASRLSGLHSEQSLPDSARLASALEAFRHNPADGTSHHRPLG 418
           V LFRA  L+ LH   +     R A A++    NP D  +H  PLG
Sbjct: 262 VALFRAKLLACLHDYDAAEAECRRALAVD----NPDDPAAHEIPLG 303


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 127 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 234
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>12_01_0941 - 9316051-9316056,9316747-9317082
          Length = 113

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 482 ASLAESGKDCSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGD 622
           ASLAE      L  PE    ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 24  ASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARL-LEASLDDHD 69


>12_01_0935 -
           9277421-9277584,9277908-9278111,9280742-9280982,
           9282165-9282494
          Length = 312

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 482 ASLAESGKDCSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGD 622
           ASLAE      L  PE    ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 22  ASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL-LEASLDDHD 67


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 488 LAESGKDCSLWSPESREALNNVTLLVAFRIQNARRDVEA 604
           +A   ++C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 445 MAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 427 PVVRSTIRGIMPERL*GRSQPSRIRQGLLTVEPRESGGSK 546
           PV RST R   P++   RS P R R    +  PR  G S+
Sbjct: 31  PVRRSTSRSPPPKKSDSRSPPPRRRSTSRSPRPRRHGRSR 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,435,415
Number of Sequences: 37544
Number of extensions: 443116
Number of successful extensions: 1185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)