Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    25   2.3  
CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein...    25   3.1  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   3.1  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   9.5  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 407 SCTRPSGRWCEVPSAGLCLNASKAEASLAESGKDC 511
           SC RP G  C  P  G C+   + E     +G  C
Sbjct: 594 SCDRPGGLLCSGPDHGRCV-CGQCECREGWTGPAC 627


>CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein
           protein.
          Length = 271

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = -1

Query: 671 GLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSNP 504
           G    D  ++   D +D   PN L++       E    K    EPP+ +  T   P
Sbjct: 105 GSSEEDENLRAPRDFLDAGKPNDLQQEGETLNKEPVETKPQESEPPEMQEVTAPKP 160


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 577 SKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDIT 681
           ++R+T+  SP GS  + ++   L+R S   SP+++
Sbjct: 178 ARRKTKPNSPLGSLLAAVTSPVLSRISSASSPNLS 212


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 520 EPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSM 627
           + R   GSK     S  + S+ E  RR+P    RSM
Sbjct: 106 DARPRFGSKAAAANSSATSSESEDERRTPPQDMRSM 141


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,429
Number of Sequences: 2352
Number of extensions: 14958
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)