Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    74   6e-13
BC151240-1|AAI51241.1| 1498|Homo sapiens SHROOM4 protein protein.      31   5.4  
AY044234-1|AAK95579.1|  723|Homo sapiens SHAP-A protein.               31   5.4  
AL121865-1|CAM13070.1|  723|Homo sapiens shroom family member 4 ...    31   5.4  
AB033028-1|BAA86516.1| 1502|Homo sapiens KIAA1202 protein protein.     31   5.4  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 73.7 bits (173), Expect = 6e-13
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = -3

Query: 246 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTSC*K 136
           MIGRADIEGSKS+VAMNAW PQASYPCGNFS TSC K
Sbjct: 1   MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37


>BC151240-1|AAI51241.1| 1498|Homo sapiens SHROOM4 protein protein.
          Length = 1498

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
 Frame = -1

Query: 671 GLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE---------CETRLVKSHCLEPPDSRGS 519
           G R R  + ++K++       N ++RR ++ +         C+T+       EPP+S   
Sbjct: 573 GTRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEPVEETQEPPESPPL 632

Query: 518 TVSNPCRIRLGWLRP*RRSGIIPR-MVLRTTGRSAECMNQMSET 390
           T SN   +      P  R  +  + M+LR   RS+EC++Q  E+
Sbjct: 633 TASNTSLLSSCKKPPSPRDKLFNKSMMLR--ARSSECLSQAPES 674


>AY044234-1|AAK95579.1|  723|Homo sapiens SHAP-A protein.
          Length = 723

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
 Frame = -1

Query: 671 GLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE---------CETRLVKSHCLEPPDSRGS 519
           G R R  + ++K++       N ++RR ++ +         C+T+       EPP+S   
Sbjct: 457 GTRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEPVEETQEPPESPPL 516

Query: 518 TVSNPCRIRLGWLRP*RRSGIIPR-MVLRTTGRSAECMNQMSET 390
           T SN   +      P  R  +  + M+LR   RS+EC++Q  E+
Sbjct: 517 TASNTSLLSSCKKPPSPRDKLFNKSMMLR--ARSSECLSQAPES 558


>AL121865-1|CAM13070.1|  723|Homo sapiens shroom family member 4
           protein.
          Length = 723

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
 Frame = -1

Query: 671 GLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE---------CETRLVKSHCLEPPDSRGS 519
           G R R  + ++K++       N ++RR ++ +         C+T+       EPP+S   
Sbjct: 457 GTRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEPVEETQEPPESPPL 516

Query: 518 TVSNPCRIRLGWLRP*RRSGIIPR-MVLRTTGRSAECMNQMSET 390
           T SN   +      P  R  +  + M+LR   RS+EC++Q  E+
Sbjct: 517 TASNTSLLSSCKKPPSPRDKLFNKSMMLR--ARSSECLSQAPES 558


>AB033028-1|BAA86516.1| 1502|Homo sapiens KIAA1202 protein protein.
          Length = 1502

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
 Frame = -1

Query: 671 GLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE---------CETRLVKSHCLEPPDSRGS 519
           G R R  + ++K++       N ++RR ++ +         C+T+       EPP+S   
Sbjct: 577 GTRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEPVEETQEPPESPPL 636

Query: 518 TVSNPCRIRLGWLRP*RRSGIIPR-MVLRTTGRSAECMNQMSET 390
           T SN   +      P  R  +  + M+LR   RS+EC++Q  E+
Sbjct: 637 TASNTSLLSSCKKPPSPRDKLFNKSMMLR--ARSSECLSQAPES 678


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,873,139
Number of Sequences: 237096
Number of extensions: 2393115
Number of successful extensions: 4823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4820
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)