Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    30   1.9  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    29   3.3  
Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z70757-9|CAH19098.1|  120|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 416 RPSGRWCEVPSAGLCLNASKAEASLAESGKDCSLWSPESREALNNVT 556
           RPSG WC     GL L  ++ EAS   + +   L   +++  LN +T
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEASARCAAEGAVLSGVQNQAELNAMT 81


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 383 EPQFRTFGSCTRPSGRWCEVPSAGLCLNASKAEASLAESGKDCSLWSPESR-EALNNVTL 559
           EP ++ F    RPSG WC    AG   NA KA+A  +      +L   +++ EAL   T 
Sbjct: 41  EPGWKFFN---RPSGGWCMRVFAG--FNAKKADAEKSCQAVGSTLSGIQNKNEALYIQTA 95

Query: 560 LVAFRIQNARRDVEAHLDRGDRCYR 634
           L+A +I  +   V   + R  +C +
Sbjct: 96  LLA-QIPQSSGSVWIGIQRTQKCLK 119


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 565 RVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDITQFD 690
           R S S++++RRR+    RR ++    + ++  LRS   TQF+
Sbjct: 378 RTSSSRQKSRRRNSKSQRRPLVLTKNVNKSHSLRSRRFTQFE 419


>Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical
           protein F19C6.2b protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 526 RESGGSKQCDFTSRVSHSKRET---RRRSPFGSRRSMLSVFFLTRASRLRSPDITQFDVG 696
           RES  S   D +S   ++K++    ++R+ FG +R + ++   T+ S    PD    D  
Sbjct: 295 RESDCSGNEDDSSNAKYAKKQVFKKKKRNAFGKKRELAAILDHTKPSEHSEPDYVAPDNS 354

Query: 697 A 699
           A
Sbjct: 355 A 355


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 526 RESGGSKQCDFTSRVSHSKRET---RRRSPFGSRRSMLSVFFLTRASRLRSPDITQFDVG 696
           RES  S   D +S   ++K++    ++R+ FG +R + ++   T+ S    PD    D  
Sbjct: 341 RESDCSGNEDDSSNAKYAKKQVFKKKKRNAFGKKRELAAILDHTKPSEHSEPDYVAPDNS 400

Query: 697 A 699
           A
Sbjct: 401 A 401


>Z70757-9|CAH19098.1|  120|Caenorhabditis elegans Hypothetical
           protein ZK287.8b protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 365 YCSVREEPQFRTFGSCTRPSGRWCEVPSAGLCLNASKAEASLAESGKDCSL 517
           YC   +      FG+    SGR CE     L  + S   A+  +S K CSL
Sbjct: 26  YCLYSDSVCCSVFGNDQNDSGRRCENRCKNLMTSPSIDAATRLDSIKSCSL 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,607
Number of Sequences: 27780
Number of extensions: 348223
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)