Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 515  VSNPCRIRLGWLRP*RRSGIIPRMVLRT 432
            VS+P  + + WL P   +GII +  L T
Sbjct: 1224 VSSPQALFISWLPPLEPNGIITKYNLYT 1251


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 515  VSNPCRIRLGWLRP*RRSGIIPRMVLRT 432
            VS+P  + + WL P   +GII +  L T
Sbjct: 1220 VSSPQALFISWLPPLEPNGIITKYNLYT 1247


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 437 RTTGRSAECMNQMSETAVPLVLSS 366
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 563 LVKSHCLEPPDSRGSTVSNPCRIRLGWLRP 474
           ++  +C+  P    ST+ +P R +L   +P
Sbjct: 790 MIPVYCVPVPQVNDSTILSPVREKLSSSQP 819


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,901
Number of Sequences: 438
Number of extensions: 4285
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)