Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1196
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18520.1 68414.m02311 senescence-associated family protein si...    31   0.75 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.0  
At4g26190.1 68417.m03770 expressed protein                             28   5.3  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    28   5.3  
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do...    28   7.0  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   7.0  
At2g44220.1 68415.m05503 expressed protein  and genefinder conta...    28   7.0  
At4g29310.1 68417.m04190 expressed protein                             27   9.3  

>At1g18520.1 68414.m02311 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 271

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +2

Query: 404 GSCTRPSGRWCEVPSAGLCLNASKAEASLAESGKDCSLWSPESREALNNVTLLVAFRIQN 583
           G C  PS    E  +A   +  SK E ++AE+G DC  WS    E   N     A  + N
Sbjct: 171 GCCKPPSDCNFEFRNATFWIPPSKNETAVAENG-DCGTWSNVQTELCFNCNACKAGVLAN 229

Query: 584 AR 589
            R
Sbjct: 230 IR 231


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 20  LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 133
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 576  FKTRDATSKPIWIAEIDAIGFFLNTCITAPKSGYN 680
            FKT++   KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 321 VSRRSNPAHVPF*WVNNPTLGEFFAMIGRADIEGSKSNVAMNAWLPQ 181
           V RR +P  V      +P + +    +  AD+ GS  NV M AW P+
Sbjct: 97  VYRRGSPGSV----YRSPKVFKRLWPVMEADVNGSSHNVLMEAWKPR 139


>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
           domain-containing protein contains Pfam domain PF00043:
           Glutathione S-transferase, C-terminal domain
          Length = 399

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LNASKAEASLAESGKDCSLWSPESRE 538
           LNAS  + +++ SG   SLW P +R+
Sbjct: 362 LNASGIQPAISSSGDQDSLWRPHNRD 387


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 405 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSNPAHVP 289
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At2g44220.1 68415.m05503 expressed protein  and genefinder contains
           Pfam profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 393

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 273 NPTLGEFFAMIGRADIEGSKSNVAMNAWLPQASYP 169
           +PTLG  +A++G  + +   + VA+N W P    P
Sbjct: 140 DPTLGHQYALMGVRNGKFYGTEVAINLWKPYVQIP 174


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 228 IEGSKSNVAMNAWLPQASYPCGNFSGTSC*KLFILKDR*AVLSQSLCVLNIWIK 67
           I G K ++ ++ +  +  + CG  SG    K+ +  D  A LS+++   N W K
Sbjct: 85  ISGKKISLRVSVYAGRTGHTCGVASGKLLGKVEVAVDLAAALSRTVAFHNGWKK 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,232
Number of Sequences: 28952
Number of extensions: 337609
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)