Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1195
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0U9Y5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    33   7.2  
UniRef50_A5GSE8 Cluster: Permease of the major facilitator super...    33   9.5  

>UniRef50_Q0U9Y5 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 471

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 525 SLNKRAFQTVDLRDCLELVDLWSYFDLYAPWRVLRGIVL 641
           SL +RA Q +    CL L+D++S+  +YAP   + G VL
Sbjct: 247 SLTRRAIQHLVYYGCLVLLDIFSFSAIYAPTAEIGGFVL 285


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
 Frame = +2

Query: 83  SNQEGKAKLASKMLSL------QFARGQRVMIYKTRL 175
           S+ EGKAKLASKML +       F  GQR+++YK ++
Sbjct: 790 SHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQV 826


>UniRef50_A5GSE8 Cluster: Permease of the major facilitator
           superfamily; n=1; Synechococcus sp. RCC307|Rep: Permease
           of the major facilitator superfamily - Synechococcus sp.
           (strain RCC307)
          Length = 522

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 516 PFNSLNKRAFQTVDLRDCLELVDLWSYFDLYAPWRVLRGIVLCLLTNFWTVLV*YDQNKE 695
           P++ + K  F           + L +Y   Y  WR++   +  LL + W +++ Y  + E
Sbjct: 135 PYSEIGKGLFVVNFAFGATVGISLAAYTTWYLSWRLIYAGLALLLFSAWVLIIRYMPSDE 194

Query: 696 GNPN 707
           G+PN
Sbjct: 195 GDPN 198


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,260,902
Number of Sequences: 1657284
Number of extensions: 12514400
Number of successful extensions: 21784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21783
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)