Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1195
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634...    28   8.7  

>02_04_0123 +
           19961904-19962096,19962836-19963029,19963334-19963465,
           19963921-19964038,19964248-19964484,19964576-19964658,
           19964777-19965004,19965394-19965470,19965590-19965626,
           19965786-19965952,19966156-19966234,19966301-19966378,
           19967459-19967575,19967999-19968379,19968453-19968590,
           19968680-19968769,19968832-19968840
          Length = 785

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 566 LFRTCGSMELF*SLCSMESAQRNSTMLIDKFLDSACLV 679
           ++  CG ++LF  +C  E +  NS + + +  D  CLV
Sbjct: 370 IYDACGQVDLFTLICQNELSS-NSALSLSELSDEDCLV 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,576,261
Number of Sequences: 37544
Number of extensions: 338116
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)