Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1195
         (729 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosenso...    32   0.92 
AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA...    32   0.92 
AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB...    32   0.92 

>AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosensory
            transduction channelNOMPC protein.
          Length = 1619

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 537  RAFQTVDLRDCLELVDLWSYFDLYAPWRVLRGIVLCLLTNFWTVL 671
            + F    L  C++++D  S+  L+ PW ++ G +L  L  F  VL
Sbjct: 1403 QCFALAFLLACVQILDFLSFHHLFGPWAIIIGDLLKDLARFLAVL 1447


>AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA,
            isoform A protein.
          Length = 1619

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 537  RAFQTVDLRDCLELVDLWSYFDLYAPWRVLRGIVLCLLTNFWTVL 671
            + F    L  C++++D  S+  L+ PW ++ G +L  L  F  VL
Sbjct: 1403 QCFALAFLLACVQILDFLSFHHLFGPWAIIIGDLLKDLARFLAVL 1447


>AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB,
            isoform B protein.
          Length = 1712

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 537  RAFQTVDLRDCLELVDLWSYFDLYAPWRVLRGIVLCLLTNFWTVL 671
            + F    L  C++++D  S+  L+ PW ++ G +L  L  F  VL
Sbjct: 1403 QCFALAFLLACVQILDFLSFHHLFGPWAIIIGDLLKDLARFLAVL 1447


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,889,021
Number of Sequences: 53049
Number of extensions: 568858
Number of successful extensions: 1074
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)