Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1192
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.63 
06_01_0350 + 2534422-2535615                                           31   0.84 
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   1.9  
05_06_0098 + 25560158-25560925                                         29   3.4  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   3.4  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   5.9  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   5.9  
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     28   5.9  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    27   7.8  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -1

Query: 388 TNIDQTRH------RPHPLPVQTRHAPVLRANP 308
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 83  PWNSNAQAEKKTLPGPLGGVFRP 15
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 358 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 269
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 367 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLF 257
           HRP P P  +   P L  +P + V   I   P PT F
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTF 67


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 364 RPHPLPVQTRHAPVLRANPYSEVTDP 287
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 390 ARTSTRPGTGRIRFPSKPDTPRSSE 316
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 378 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 292
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 220 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 89
           G+   P+ H    P P+      S  R PP  R S RSE   P +
Sbjct: 26  GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 352 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLF 257
           +P Q + A  + A+P + V    C LP P+LF
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLF 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,921
Number of Sequences: 37544
Number of extensions: 384280
Number of successful extensions: 1384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)