Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1192
         (565 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093754-1|AAH93754.1|  587|Homo sapiens hypothetical protein LO...    31   3.7  
BC093752-1|AAH93752.1|  587|Homo sapiens hypothetical protein LO...    31   3.7  
AF131737-1|AAD20026.1|  587|Homo sapiens Unknown protein.              31   3.7  
AC079353-1|AAY24034.1|  423|Homo sapiens unknown protein.              31   3.7  
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated...    30   6.5  
AK127686-1|BAC87084.1|  401|Homo sapiens protein ( Homo sapiens ...    30   6.5  
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ...    30   6.5  

>BC093754-1|AAH93754.1|  587|Homo sapiens hypothetical protein
           LOC51057 protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 66  SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 197
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>BC093752-1|AAH93752.1|  587|Homo sapiens hypothetical protein
           LOC51057 protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 66  SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 197
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AF131737-1|AAD20026.1|  587|Homo sapiens Unknown protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 66  SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 197
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AC079353-1|AAY24034.1|  423|Homo sapiens unknown protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 66  SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 197
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
            protein protein.
          Length = 5005

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -1

Query: 229  TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 50
            T   YG +    + V  S + SRS E++   P+ R S  S PY PS     + +  Q R 
Sbjct: 1325 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 1381

Query: 49   LFPDLSAASS 20
            +   +S A S
Sbjct: 1382 MDSSMSMADS 1391


>AK127686-1|BAC87084.1|  401|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45784 fis, clone NETRP2006468. ).
          Length = 401

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -1

Query: 229 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 50
           T   YG +    + V  S + SRS E++   P+ R S  S PY PS     + +  Q R 
Sbjct: 311 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 367

Query: 49  LFPDLSAASS 20
           +   +S A S
Sbjct: 368 MDSSMSMADS 377


>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens cDNA
            FLJ42912 fis, clone BRHIP3024533. ).
          Length = 1168

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -1

Query: 229  TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 50
            T   YG +    + V  S + SRS E++   P+ R S  S PY PS     + +  Q R 
Sbjct: 1078 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 1134

Query: 49   LFPDLSAASS 20
            +   +S A S
Sbjct: 1135 MDSSMSMADS 1144


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,467,699
Number of Sequences: 237096
Number of extensions: 1938804
Number of successful extensions: 5778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5778
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)