Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1192
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    31   0.76 
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    31   0.76 
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    31   0.76 
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    31   0.76 
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical
           protein R11B5.1 protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 418 FNIMRPQKLYIFNMTLAKIVLRFGLDPDPRFRPSADLPSRKVVSVSF 558
           + I+RP   Y+ +MT    VL   +DP P F   A+L  R + S  F
Sbjct: 387 YAILRPDIGYVQSMTFIAAVLLIQMDPYPAFISFANLLDRSLQSAFF 433


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 558 KRNRHDLTARKIRGRPETRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNAR 385
           KR    L  R+   RPE      S+  D   E   +    +R + +KI  LT  NE+   
Sbjct: 509 KRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGE 566

Query: 384 TSTRPGTGRIRFPSKPDT 331
           TS++PG  R+  P+K DT
Sbjct: 567 TSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 558 KRNRHDLTARKIRGRPETRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNAR 385
           KR    L  R+   RPE      S+  D   E   +    +R + +KI  LT  NE+   
Sbjct: 478 KRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGE 535

Query: 384 TSTRPGTGRIRFPSKPDT 331
           TS++PG  R+  P+K DT
Sbjct: 536 TSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 558 KRNRHDLTARKIRGRPETRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNAR 385
           KR    L  R+   RPE      S+  D   E   +    +R + +KI  LT  NE+   
Sbjct: 509 KRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGE 566

Query: 384 TSTRPGTGRIRFPSKPDT 331
           TS++PG  R+  P+K DT
Sbjct: 567 TSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 558 KRNRHDLTARKIRGRPETRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNAR 385
           KR    L  R+   RPE      S+  D   E   +    +R + +KI  LT  NE+   
Sbjct: 478 KRIARALIRRRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGE 535

Query: 384 TSTRPGTGRIRFPSKPDT 331
           TS++PG  R+  P+K DT
Sbjct: 536 TSSQPGRDRLAPPNKTDT 553


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 397  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 284
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 164 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 36
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 148 IRTPPQMRCSSRSEPYLPSIGFHGT 74
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 372 PGTGRIRFPSKPDTPRSSEPILIPKLRI 289
           P    ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 169 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 68
           FS S E+  T  Q R +  S P  YLPSIG + T T
Sbjct: 11  FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 448 IFNMTLAKIVLRFGLDPDPRFRPSADLPSR 537
           I  + + +I     LDP+PR RP+   PSR
Sbjct: 143 ISQLEIEEIDSSMSLDPEPRRRPATRTPSR 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,603,172
Number of Sequences: 27780
Number of extensions: 294059
Number of successful extensions: 1034
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)